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Cluster: HRGMv2_0429_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0429_8 HRGMv2_0429_8_29 35389 38550 + 1.B.14.6.2
pfam HRGMv2_0429_8 HRGMv2_0429_8_30 38609 40144 + SusD-like | SusD-like_2
pfam HRGMv2_0429_8 HRGMv2_0429_8_31 40253 41176 - Mfa2
CAZyme HRGMv2_0429_8 HRGMv2_0429_8_32 41339 43783 - GH10
pfam HRGMv2_0429_8 HRGMv2_0429_8_33 43837 45258 - SGBP_B_XBD
pfam HRGMv2_0429_8 HRGMv2_0429_8_34 45315 47057 - SusD_RagB | SusD-like_3
TC HRGMv2_0429_8 HRGMv2_0429_8_35 47080 50235 - 1.B.14.6.1
CAZyme HRGMv2_0429_8 HRGMv2_0429_8_36 50483 52486 - GH67
Gene ID: HRGMv2_0429_8_29
Type: TC
Location: 35389 - 38550 (+)
Gene ID: HRGMv2_0429_8_30
Type: pfam
Location: 38609 - 40144 (+)
Gene ID: HRGMv2_0429_8_31
Type: pfam
Location: 40253 - 41176 (-)
Gene ID: HRGMv2_0429_8_32
Type: CAZyme
Location: 41339 - 43783 (-)
Gene ID: HRGMv2_0429_8_33
Type: pfam
Location: 43837 - 45258 (-)
Gene ID: HRGMv2_0429_8_34
Type: pfam
Location: 45315 - 47057 (-)
Gene ID: HRGMv2_0429_8_35
Type: TC
Location: 47080 - 50235 (-)
Gene ID: HRGMv2_0429_8_36
Type: CAZyme
Location: 50483 - 52486 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0429_8_29 vegetarian > vegan 1.87777 0.00567

🧭 Explore Read Mapping of CGC

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