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Cluster: HRGMv2_0429_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0429_5 HRGMv2_0429_5_142 164634 166409 + 3.B.1.1.6
STP HRGMv2_0429_5 HRGMv2_0429_5_143 166472 167008 + HD
TC HRGMv2_0429_5 HRGMv2_0429_5_144 167026 169878 + 1.B.42.1.8
pfam HRGMv2_0429_5 HRGMv2_0429_5_145 169923 171659 - PIF1 | AAA_19 | AAA_22 | AAA_30
CAZyme HRGMv2_0429_5 HRGMv2_0429_5_146 171669 174218 - GT51
pfam HRGMv2_0429_5 HRGMv2_0429_5_147 174571 176049 + Fucose_iso_C
pfam HRGMv2_0429_5 HRGMv2_0429_5_148 176256 177581 + OEP | OEP
TC HRGMv2_0429_5 HRGMv2_0429_5_149 177621 178787 + 8.A.1.1.2
Gene ID: HRGMv2_0429_5_142
Type: TC
Location: 164634 - 166409 (+)
Gene ID: HRGMv2_0429_5_143
Type: STP
Location: 166472 - 167008 (+)
Gene ID: HRGMv2_0429_5_144
Type: TC
Location: 167026 - 169878 (+)
Gene ID: HRGMv2_0429_5_145
Type: pfam
Location: 169923 - 171659 (-)
Gene ID: HRGMv2_0429_5_146
Type: CAZyme
Location: 171669 - 174218 (-)
Gene ID: HRGMv2_0429_5_147
Type: pfam
Location: 174571 - 176049 (+)
Gene ID: HRGMv2_0429_5_148
Type: pfam
Location: 176256 - 177581 (+)
Gene ID: HRGMv2_0429_5_149
Type: TC
Location: 177621 - 178787 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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