Cluster: HRGMv2_0429_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0429
- CGC Family ID: CGCFAM_05958
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0429_1 | HRGMv2_0429_1_238 | 280321 | 281712 | - | CBM50 |
| pfam | HRGMv2_0429_1 | HRGMv2_0429_1_239 | 281816 | 282232 | + | CHU_C |
| pfam | HRGMv2_0429_1 | HRGMv2_0429_1_240 | 282276 | 285092 | + | UvrA_DNA-bind | UvrA_inter |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_241 | 285117 | 286022 | - | 2.A.115.1.1 |
| pfam | HRGMv2_0429_1 | HRGMv2_0429_1_242 | 286053 | 286238 | - | DUF4250 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_243 | 286386 | 287837 | - | 3.D.1.2.1 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_244 | 287853 | 289352 | - | 3.D.9.1.1 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_245 | 289386 | 291338 | - | 3.D.9.1.1 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_246 | 291348 | 291656 | - | 3.D.1.2.1 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_247 | 291653 | 292159 | - | 3.D.9.1.1 |
| STP | HRGMv2_0429_1 | HRGMv2_0429_1_248 | 292196 | 292726 | - | Fer4 | Fer4 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_249 | 292759 | 293844 | - | 3.D.1.5.1 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_250 | 293847 | 295418 | - | 3.D.1.5.1 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_251 | 295439 | 296164 | - | 3.D.1.6.1 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_252 | 296155 | 296505 | - | 3.D.1.8.1 |
Gene ID: HRGMv2_0429_1_238
Type: CAZyme
Location: 280321 - 281712 (-)
Type: CAZyme
Location: 280321 - 281712 (-)
Gene ID: HRGMv2_0429_1_239
Type: pfam
Location: 281816 - 282232 (+)
Type: pfam
Location: 281816 - 282232 (+)
Gene ID: HRGMv2_0429_1_240
Type: pfam
Location: 282276 - 285092 (+)
Type: pfam
Location: 282276 - 285092 (+)
Gene ID: HRGMv2_0429_1_241
Type: TC
Location: 285117 - 286022 (-)
Type: TC
Location: 285117 - 286022 (-)
Gene ID: HRGMv2_0429_1_242
Type: pfam
Location: 286053 - 286238 (-)
Type: pfam
Location: 286053 - 286238 (-)
Gene ID: HRGMv2_0429_1_243
Type: TC
Location: 286386 - 287837 (-)
Type: TC
Location: 286386 - 287837 (-)
Gene ID: HRGMv2_0429_1_244
Type: TC
Location: 287853 - 289352 (-)
Type: TC
Location: 287853 - 289352 (-)
Gene ID: HRGMv2_0429_1_245
Type: TC
Location: 289386 - 291338 (-)
Type: TC
Location: 289386 - 291338 (-)
Gene ID: HRGMv2_0429_1_246
Type: TC
Location: 291348 - 291656 (-)
Type: TC
Location: 291348 - 291656 (-)
Gene ID: HRGMv2_0429_1_247
Type: TC
Location: 291653 - 292159 (-)
Type: TC
Location: 291653 - 292159 (-)
Gene ID: HRGMv2_0429_1_248
Type: STP
Location: 292196 - 292726 (-)
Type: STP
Location: 292196 - 292726 (-)
Gene ID: HRGMv2_0429_1_249
Type: TC
Location: 292759 - 293844 (-)
Type: TC
Location: 292759 - 293844 (-)
Gene ID: HRGMv2_0429_1_250
Type: TC
Location: 293847 - 295418 (-)
Type: TC
Location: 293847 - 295418 (-)
Gene ID: HRGMv2_0429_1_251
Type: TC
Location: 295439 - 296164 (-)
Type: TC
Location: 295439 - 296164 (-)
Gene ID: HRGMv2_0429_1_252
Type: TC
Location: 296155 - 296505 (-)
Type: TC
Location: 296155 - 296505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0429_1_251 | vegetarian > vegan | 1.00182 | 0.00567 |
| HRGMv2_0429_1_252 | vegetarian > vegan | 1.05191 | 0.00567 |