Cluster: HRGMv2_0429_CGC17
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0429
- CGC Family ID: CGCFAM_00048
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0429_5 | HRGMv2_0429_5_35 | 27795 | 29132 | - | 2.A.66.1.33 |
| pfam | HRGMv2_0429_5 | HRGMv2_0429_5_36 | 29410 | 32070 | - | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| TF | HRGMv2_0429_5 | HRGMv2_0429_5_37 | 32211 | 32558 | + | MerR |
| CAZyme | HRGMv2_0429_5 | HRGMv2_0429_5_38 | 32568 | 33557 | - | CE8 |
| STP | HRGMv2_0429_5 | HRGMv2_0429_5_39 | 33579 | 35876 | - | HD |
| CAZyme | HRGMv2_0429_5 | HRGMv2_0429_5_40 | 35883 | 37265 | - | GH23 |
| pfam | HRGMv2_0429_5 | HRGMv2_0429_5_41 | 37341 | 38048 | - | DUF5683 |
| pfam | HRGMv2_0429_5 | HRGMv2_0429_5_42 | 38107 | 39018 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | HRGMv2_0429_5 | HRGMv2_0429_5_43 | 39022 | 39924 | - | 8.A.3.2.3 |
| pfam | HRGMv2_0429_5 | HRGMv2_0429_5_44 | 39962 | 40702 | + | SurE |
| CAZyme | HRGMv2_0429_5 | HRGMv2_0429_5_45 | 40699 | 42051 | + | GT19 |
| CAZyme | HRGMv2_0429_5 | HRGMv2_0429_5_46 | 42091 | 43050 | - | GH5_2 |
| pfam | HRGMv2_0429_5 | HRGMv2_0429_5_47 | 43205 | 44071 | - | CTP_transf_1 |
| TC | HRGMv2_0429_5 | HRGMv2_0429_5_48 | 44084 | 46195 | - | 3.A.25.1.1 |
Gene ID: HRGMv2_0429_5_35
Type: TC
Location: 27795 - 29132 (-)
Type: TC
Location: 27795 - 29132 (-)
Gene ID: HRGMv2_0429_5_36
Type: pfam
Location: 29410 - 32070 (-)
Type: pfam
Location: 29410 - 32070 (-)
Gene ID: HRGMv2_0429_5_37
Type: TF
Location: 32211 - 32558 (+)
Type: TF
Location: 32211 - 32558 (+)
Gene ID: HRGMv2_0429_5_38
Type: CAZyme
Location: 32568 - 33557 (-)
Type: CAZyme
Location: 32568 - 33557 (-)
Gene ID: HRGMv2_0429_5_39
Type: STP
Location: 33579 - 35876 (-)
Type: STP
Location: 33579 - 35876 (-)
Gene ID: HRGMv2_0429_5_40
Type: CAZyme
Location: 35883 - 37265 (-)
Type: CAZyme
Location: 35883 - 37265 (-)
Gene ID: HRGMv2_0429_5_41
Type: pfam
Location: 37341 - 38048 (-)
Type: pfam
Location: 37341 - 38048 (-)
Gene ID: HRGMv2_0429_5_42
Type: pfam
Location: 38107 - 39018 (-)
Type: pfam
Location: 38107 - 39018 (-)
Gene ID: HRGMv2_0429_5_43
Type: TC
Location: 39022 - 39924 (-)
Type: TC
Location: 39022 - 39924 (-)
Gene ID: HRGMv2_0429_5_44
Type: pfam
Location: 39962 - 40702 (+)
Type: pfam
Location: 39962 - 40702 (+)
Gene ID: HRGMv2_0429_5_45
Type: CAZyme
Location: 40699 - 42051 (+)
Type: CAZyme
Location: 40699 - 42051 (+)
Gene ID: HRGMv2_0429_5_46
Type: CAZyme
Location: 42091 - 43050 (-)
Type: CAZyme
Location: 42091 - 43050 (-)
Gene ID: HRGMv2_0429_5_47
Type: pfam
Location: 43205 - 44071 (-)
Type: pfam
Location: 43205 - 44071 (-)
Gene ID: HRGMv2_0429_5_48
Type: TC
Location: 44084 - 46195 (-)
Type: TC
Location: 44084 - 46195 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.