Cluster: HRGMv2_0429_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0429
- CGC Family ID: CGCFAM_00186
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0429_3 | HRGMv2_0429_3_40 | 49684 | 50676 | + | GT2 |
| CAZyme | HRGMv2_0429_3 | HRGMv2_0429_3_41 | 50631 | 51611 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_0429_3 | HRGMv2_0429_3_42 | 51624 | 52736 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0429_3 | HRGMv2_0429_3_43 | 52756 | 54777 | - | GH97 |
| peptidase | HRGMv2_0429_3 | HRGMv2_0429_3_44 | 54943 | 55935 | - | U32.UPW |
| NULL(UNKNOWN) | HRGMv2_0429_3 | HRGMv2_0429_3_45 | 56381 | 56596 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0429_3 | HRGMv2_0429_3_46 | 56894 | 57661 | + | 9.B.196.1.2 |
| NULL(UNKNOWN) | HRGMv2_0429_3 | HRGMv2_0429_3_47 | 57694 | 58068 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0429_3 | HRGMv2_0429_3_48 | 58139 | 58981 | - | Abi_2 |
| CAZyme | HRGMv2_0429_3 | HRGMv2_0429_3_49 | 59198 | 60280 | - | GT9 |
| pfam | HRGMv2_0429_3 | HRGMv2_0429_3_50 | 60355 | 61086 | - | DUF4254 |
| TC | HRGMv2_0429_3 | HRGMv2_0429_3_51 | 61188 | 61424 | + | 3.D.1.6.3 |
Gene ID: HRGMv2_0429_3_40
Type: CAZyme
Location: 49684 - 50676 (+)
Type: CAZyme
Location: 49684 - 50676 (+)
Gene ID: HRGMv2_0429_3_41
Type: CAZyme
Location: 50631 - 51611 (+)
Type: CAZyme
Location: 50631 - 51611 (+)
Gene ID: HRGMv2_0429_3_42
Type:
Location: 51624 - 52736 (+)
Type:
Location: 51624 - 52736 (+)
Gene ID: HRGMv2_0429_3_43
Type: CAZyme
Location: 52756 - 54777 (-)
Type: CAZyme
Location: 52756 - 54777 (-)
Gene ID: HRGMv2_0429_3_44
Type: peptidase
Location: 54943 - 55935 (-)
Type: peptidase
Location: 54943 - 55935 (-)
Gene ID: HRGMv2_0429_3_45
Type:
Location: 56381 - 56596 (-)
Type:
Location: 56381 - 56596 (-)
Gene ID: HRGMv2_0429_3_46
Type: TC
Location: 56894 - 57661 (+)
Type: TC
Location: 56894 - 57661 (+)
Gene ID: HRGMv2_0429_3_47
Type:
Location: 57694 - 58068 (+)
Type:
Location: 57694 - 58068 (+)
Gene ID: HRGMv2_0429_3_48
Type: pfam
Location: 58139 - 58981 (-)
Type: pfam
Location: 58139 - 58981 (-)
Gene ID: HRGMv2_0429_3_49
Type: CAZyme
Location: 59198 - 60280 (-)
Type: CAZyme
Location: 59198 - 60280 (-)
Gene ID: HRGMv2_0429_3_50
Type: pfam
Location: 60355 - 61086 (-)
Type: pfam
Location: 60355 - 61086 (-)
Gene ID: HRGMv2_0429_3_51
Type: TC
Location: 61188 - 61424 (+)
Type: TC
Location: 61188 - 61424 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0429_3_40 | vegetarian > vegan | 3.66694 | 0.00567 |
| HRGMv2_0429_3_42 | vegetarian > vegan | 1.73243 | 0.00567 |
| HRGMv2_0429_3_43 | vegetarian > omnivore | 1.01917 | 0.01573 |
| HRGMv2_0429_3_43 | vegetarian > vegan | 2.68604 | 0.00567 |
| HRGMv2_0429_3_49 | vegetarian > vegan | 1.21046 | 0.00567 |