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Cluster: HRGMv2_0429_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0429_3 HRGMv2_0429_3_1 214 2412 - GH36
NULL(UNKNOWN) HRGMv2_0429_3 HRGMv2_0429_3_2 2563 2652 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0429_3 HRGMv2_0429_3_3 2665 3321 + 1.C.113.1.3
TC HRGMv2_0429_3 HRGMv2_0429_3_4 3600 4424 + 3.A.1.132.6
NULL(UNKNOWN) HRGMv2_0429_3 HRGMv2_0429_3_5 4438 5280 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0429_3 HRGMv2_0429_3_6 5292 5699 + GntR
TC HRGMv2_0429_3 HRGMv2_0429_3_7 6192 6902 + 3.A.1.122.14
NULL(UNKNOWN) HRGMv2_0429_3 HRGMv2_0429_3_8 6960 7073 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0429_3 HRGMv2_0429_3_9 7070 8329 + 3.A.1.122.2
TC HRGMv2_0429_3 HRGMv2_0429_3_10 8408 9655 + 3.A.1.122.12
Gene ID: HRGMv2_0429_3_1
Type: CAZyme
Location: 214 - 2412 (-)
Gene ID: HRGMv2_0429_3_2
Type:
Location: 2563 - 2652 (+)
Gene ID: HRGMv2_0429_3_3
Type: TC
Location: 2665 - 3321 (+)
Gene ID: HRGMv2_0429_3_4
Type: TC
Location: 3600 - 4424 (+)
Gene ID: HRGMv2_0429_3_5
Type:
Location: 4438 - 5280 (+)
Gene ID: HRGMv2_0429_3_6
Type: TF
Location: 5292 - 5699 (+)
Gene ID: HRGMv2_0429_3_7
Type: TC
Location: 6192 - 6902 (+)
Gene ID: HRGMv2_0429_3_8
Type:
Location: 6960 - 7073 (+)
Gene ID: HRGMv2_0429_3_9
Type: TC
Location: 7070 - 8329 (+)
Gene ID: HRGMv2_0429_3_10
Type: TC
Location: 8408 - 9655 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0429_3_5 vegetarian > omnivore 1.07742 0.01573

🧭 Explore Read Mapping of CGC

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