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Cluster: HRGMv2_0426_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0426_28 HRGMv2_0426_28_1 137 2029 - GH43_4
pfam HRGMv2_0426_28 HRGMv2_0426_28_2 2072 3856 - SusD_RagB | SusD-like_3
TC HRGMv2_0426_28 HRGMv2_0426_28_3 3872 7105 - 1.B.14.6.1
pfam HRGMv2_0426_28 HRGMv2_0426_28_4 7135 8901 - SusD_RagB | SusD-like_3
TC HRGMv2_0426_28 HRGMv2_0426_28_5 8917 12042 - 1.B.14.6.1
pfam HRGMv2_0426_28 HRGMv2_0426_28_6 12071 13930 - Laminin_G_3
TF HRGMv2_0426_28 HRGMv2_0426_28_7 14109 18275 - HTH_AraC
CAZyme HRGMv2_0426_28 HRGMv2_0426_28_8 18720 20081 + GH43_4
CAZyme HRGMv2_0426_28 HRGMv2_0426_28_9 20120 22135 + GH51_2
CAZyme HRGMv2_0426_28 HRGMv2_0426_28_10 22145 23683 + GH51_1
Gene ID: HRGMv2_0426_28_1
Type: CAZyme
Location: 137 - 2029 (-)
Gene ID: HRGMv2_0426_28_2
Type: pfam
Location: 2072 - 3856 (-)
Gene ID: HRGMv2_0426_28_3
Type: TC
Location: 3872 - 7105 (-)
Gene ID: HRGMv2_0426_28_4
Type: pfam
Location: 7135 - 8901 (-)
Gene ID: HRGMv2_0426_28_5
Type: TC
Location: 8917 - 12042 (-)
Gene ID: HRGMv2_0426_28_6
Type: pfam
Location: 12071 - 13930 (-)
Gene ID: HRGMv2_0426_28_7
Type: TF
Location: 14109 - 18275 (-)
Gene ID: HRGMv2_0426_28_8
Type: CAZyme
Location: 18720 - 20081 (+)
Gene ID: HRGMv2_0426_28_9
Type: CAZyme
Location: 20120 - 22135 (+)
Gene ID: HRGMv2_0426_28_10
Type: CAZyme
Location: 22145 - 23683 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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