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Cluster: HRGMv2_0426_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0426_25 HRGMv2_0426_25_29 27871 29511 + GH23
TC HRGMv2_0426_25 HRGMv2_0426_25_30 29518 31512 + 2.A.67.4.2
TC HRGMv2_0426_25 HRGMv2_0426_25_31 31509 32804 + 2.A.66.1.4
TF HRGMv2_0426_25 HRGMv2_0426_25_32 32887 33453 + GerE
STP HRGMv2_0426_25 HRGMv2_0426_25_33 33557 34501 + FecR
TC HRGMv2_0426_25 HRGMv2_0426_25_34 34530 37775 + 1.B.14.6.1
pfam HRGMv2_0426_25 HRGMv2_0426_25_35 37788 39515 + SusD_RagB | SusD-like_3
peptidase HRGMv2_0426_25 HRGMv2_0426_25_36 39568 42021 + S08.UPA
CAZyme HRGMv2_0426_25 HRGMv2_0426_25_37 42146 44716 + GH31_15
TC HRGMv2_0426_25 HRGMv2_0426_25_38 44786 45505 - 1.B.44.1.2
Gene ID: HRGMv2_0426_25_29
Type: CAZyme
Location: 27871 - 29511 (+)
Gene ID: HRGMv2_0426_25_30
Type: TC
Location: 29518 - 31512 (+)
Gene ID: HRGMv2_0426_25_31
Type: TC
Location: 31509 - 32804 (+)
Gene ID: HRGMv2_0426_25_32
Type: TF
Location: 32887 - 33453 (+)
Gene ID: HRGMv2_0426_25_33
Type: STP
Location: 33557 - 34501 (+)
Gene ID: HRGMv2_0426_25_34
Type: TC
Location: 34530 - 37775 (+)
Gene ID: HRGMv2_0426_25_35
Type: pfam
Location: 37788 - 39515 (+)
Gene ID: HRGMv2_0426_25_36
Type: peptidase
Location: 39568 - 42021 (+)
Gene ID: HRGMv2_0426_25_37
Type: CAZyme
Location: 42146 - 44716 (+)
Gene ID: HRGMv2_0426_25_38
Type: TC
Location: 44786 - 45505 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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