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Cluster: HRGMv2_0426_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0426_23 HRGMv2_0426_23_10 14187 16505 - GH105 | GH154
CAZyme HRGMv2_0426_23 HRGMv2_0426_23_11 16511 17587 - GH43_24
TF HRGMv2_0426_23 HRGMv2_0426_23_12 17639 19867 - HTH_AraC
pfam HRGMv2_0426_23 HRGMv2_0426_23_13 19864 21657 - Reg_prop | Reg_prop | Reg_prop | Reg_prop | Reg_prop
TC HRGMv2_0426_23 HRGMv2_0426_23_14 21966 25169 + 1.B.14.6.1
pfam HRGMv2_0426_23 HRGMv2_0426_23_15 25186 27192 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0426_23 HRGMv2_0426_23_16 27368 27850 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0426_23 HRGMv2_0426_23_17 27879 30470 - 3.A.9.1.2
Gene ID: HRGMv2_0426_23_10
Type: CAZyme
Location: 14187 - 16505 (-)
Gene ID: HRGMv2_0426_23_11
Type: CAZyme
Location: 16511 - 17587 (-)
Gene ID: HRGMv2_0426_23_12
Type: TF
Location: 17639 - 19867 (-)
Gene ID: HRGMv2_0426_23_13
Type: pfam
Location: 19864 - 21657 (-)
Gene ID: HRGMv2_0426_23_14
Type: TC
Location: 21966 - 25169 (+)
Gene ID: HRGMv2_0426_23_15
Type: pfam
Location: 25186 - 27192 (+)
Gene ID: HRGMv2_0426_23_16
Type:
Location: 27368 - 27850 (-)
Gene ID: HRGMv2_0426_23_17
Type: TC
Location: 27879 - 30470 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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