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Cluster: HRGMv2_0426_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0426_19 HRGMv2_0426_19_18 19405 20457 + GT4
TF HRGMv2_0426_19 HRGMv2_0426_19_19 20439 24326 - HTH_AraC
CAZyme HRGMv2_0426_19 HRGMv2_0426_19_20 24482 27031 + GH147
TC HRGMv2_0426_19 HRGMv2_0426_19_21 27203 30187 + 1.B.14.6.1
TC HRGMv2_0426_19 HRGMv2_0426_19_22 30201 31772 + 8.A.46.1.1
pfam HRGMv2_0426_19 HRGMv2_0426_19_23 31776 33482 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_0426_19 HRGMv2_0426_19_24 33601 34662 + GH53
CAZyme HRGMv2_0426_19 HRGMv2_0426_19_25 34725 37163 + GH2
Gene ID: HRGMv2_0426_19_18
Type: CAZyme
Location: 19405 - 20457 (+)
Gene ID: HRGMv2_0426_19_19
Type: TF
Location: 20439 - 24326 (-)
Gene ID: HRGMv2_0426_19_20
Type: CAZyme
Location: 24482 - 27031 (+)
Gene ID: HRGMv2_0426_19_21
Type: TC
Location: 27203 - 30187 (+)
Gene ID: HRGMv2_0426_19_22
Type: TC
Location: 30201 - 31772 (+)
Gene ID: HRGMv2_0426_19_23
Type: pfam
Location: 31776 - 33482 (+)
Gene ID: HRGMv2_0426_19_24
Type: CAZyme
Location: 33601 - 34662 (+)
Gene ID: HRGMv2_0426_19_25
Type: CAZyme
Location: 34725 - 37163 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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