Cluster: HRGMv2_0426_CGC22
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 14
- Substrate: xylan
- Genome ID: HRGMv2_0426
- CGC Family ID: CGCFAM_00273
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_28 | 37271 | 39721 | - | GH31_4 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_29 | 39822 | 40805 | - | GH43_1 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_30 | 40821 | 41927 | - | GH10 |
| TC | HRGMv2_0426_9 | HRGMv2_0426_9_31 | 41960 | 43354 | - | 2.A.2.3.2 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_32 | 43387 | 45357 | - | GH97 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_33 | 45354 | 46811 | - | CE6 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_34 | 46830 | 48890 | - | GH5_21 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_35 | 48900 | 50273 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_36 | 50291 | 51445 | - | CE1 |
| NULL(UNKNOWN) | HRGMv2_0426_9 | HRGMv2_0426_9_37 | 51540 | 52631 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_38 | 52746 | 54857 | - | GH10 |
| pfam | HRGMv2_0426_9 | HRGMv2_0426_9_39 | 54871 | 55944 | - | BT_3987-like_N | DUF5627 |
| pfam | HRGMv2_0426_9 | HRGMv2_0426_9_40 | 55978 | 57732 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0426_9 | HRGMv2_0426_9_41 | 57751 | 60573 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0426_9 | HRGMv2_0426_9_42 | 60601 | 62520 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0426_9 | HRGMv2_0426_9_43 | 62532 | 65666 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_44 | 65738 | 67456 | - | CBM91 | GH43_12 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_45 | 67692 | 69314 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_46 | 69467 | 71083 | - | CE20 | CE20 |
| TF | HRGMv2_0426_9 | HRGMv2_0426_9_47 | 71080 | 75102 | - | HTH_AraC |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_48 | 75355 | 77931 | + | GH115 |
| CAZyme | HRGMv2_0426_9 | HRGMv2_0426_9_49 | 77933 | 79261 | + | CBM6 | GH43_29 |
Gene ID: HRGMv2_0426_9_28
Type: CAZyme
Location: 37271 - 39721 (-)
Type: CAZyme
Location: 37271 - 39721 (-)
Gene ID: HRGMv2_0426_9_29
Type: CAZyme
Location: 39822 - 40805 (-)
Type: CAZyme
Location: 39822 - 40805 (-)
Gene ID: HRGMv2_0426_9_30
Type: CAZyme
Location: 40821 - 41927 (-)
Type: CAZyme
Location: 40821 - 41927 (-)
Gene ID: HRGMv2_0426_9_31
Type: TC
Location: 41960 - 43354 (-)
Type: TC
Location: 41960 - 43354 (-)
Gene ID: HRGMv2_0426_9_32
Type: CAZyme
Location: 43387 - 45357 (-)
Type: CAZyme
Location: 43387 - 45357 (-)
Gene ID: HRGMv2_0426_9_33
Type: CAZyme
Location: 45354 - 46811 (-)
Type: CAZyme
Location: 45354 - 46811 (-)
Gene ID: HRGMv2_0426_9_34
Type: CAZyme
Location: 46830 - 48890 (-)
Type: CAZyme
Location: 46830 - 48890 (-)
Gene ID: HRGMv2_0426_9_35
Type: CAZyme
Location: 48900 - 50273 (-)
Type: CAZyme
Location: 48900 - 50273 (-)
Gene ID: HRGMv2_0426_9_36
Type: CAZyme
Location: 50291 - 51445 (-)
Type: CAZyme
Location: 50291 - 51445 (-)
Gene ID: HRGMv2_0426_9_37
Type:
Location: 51540 - 52631 (-)
Type:
Location: 51540 - 52631 (-)
Gene ID: HRGMv2_0426_9_38
Type: CAZyme
Location: 52746 - 54857 (-)
Type: CAZyme
Location: 52746 - 54857 (-)
Gene ID: HRGMv2_0426_9_39
Type: pfam
Location: 54871 - 55944 (-)
Type: pfam
Location: 54871 - 55944 (-)
Gene ID: HRGMv2_0426_9_40
Type: pfam
Location: 55978 - 57732 (-)
Type: pfam
Location: 55978 - 57732 (-)
Gene ID: HRGMv2_0426_9_41
Type: TC
Location: 57751 - 60573 (-)
Type: TC
Location: 57751 - 60573 (-)
Gene ID: HRGMv2_0426_9_42
Type: pfam
Location: 60601 - 62520 (-)
Type: pfam
Location: 60601 - 62520 (-)
Gene ID: HRGMv2_0426_9_43
Type: TC
Location: 62532 - 65666 (-)
Type: TC
Location: 62532 - 65666 (-)
Gene ID: HRGMv2_0426_9_44
Type: CAZyme
Location: 65738 - 67456 (-)
Type: CAZyme
Location: 65738 - 67456 (-)
Gene ID: HRGMv2_0426_9_45
Type: CAZyme
Location: 67692 - 69314 (-)
Type: CAZyme
Location: 67692 - 69314 (-)
Gene ID: HRGMv2_0426_9_46
Type: CAZyme
Location: 69467 - 71083 (-)
Type: CAZyme
Location: 69467 - 71083 (-)
Gene ID: HRGMv2_0426_9_47
Type: TF
Location: 71080 - 75102 (-)
Type: TF
Location: 71080 - 75102 (-)
Gene ID: HRGMv2_0426_9_48
Type: CAZyme
Location: 75355 - 77931 (+)
Type: CAZyme
Location: 75355 - 77931 (+)
Gene ID: HRGMv2_0426_9_49
Type: CAZyme
Location: 77933 - 79261 (+)
Type: CAZyme
Location: 77933 - 79261 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
CAG-873
Species
CAG-873 sp900548975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.