Cluster: HRGMv2_0424_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0424
- CGC Family ID: CGCFAM_00080
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0424_10 | HRGMv2_0424_10_40 | 38315 | 39271 | + | 2.A.4.7.9 |
| pfam | HRGMv2_0424_10 | HRGMv2_0424_10_41 | 39435 | 43061 | + | TMEM260-like |
| pfam | HRGMv2_0424_10 | HRGMv2_0424_10_42 | 43079 | 46723 | + | TMEM260-like |
| CAZyme | HRGMv2_0424_10 | HRGMv2_0424_10_43 | 46746 | 47360 | + | CE4 |
| STP | HRGMv2_0424_10 | HRGMv2_0424_10_44 | 47329 | 48303 | + | Fer4 |
| CAZyme | HRGMv2_0424_10 | HRGMv2_0424_10_45 | 48418 | 49413 | + | GT2 |
Gene ID: HRGMv2_0424_10_40
Type: TC
Location: 38315 - 39271 (+)
Type: TC
Location: 38315 - 39271 (+)
Gene ID: HRGMv2_0424_10_41
Type: pfam
Location: 39435 - 43061 (+)
Type: pfam
Location: 39435 - 43061 (+)
Gene ID: HRGMv2_0424_10_42
Type: pfam
Location: 43079 - 46723 (+)
Type: pfam
Location: 43079 - 46723 (+)
Gene ID: HRGMv2_0424_10_43
Type: CAZyme
Location: 46746 - 47360 (+)
Type: CAZyme
Location: 46746 - 47360 (+)
Gene ID: HRGMv2_0424_10_44
Type: STP
Location: 47329 - 48303 (+)
Type: STP
Location: 47329 - 48303 (+)
Gene ID: HRGMv2_0424_10_45
Type: CAZyme
Location: 48418 - 49413 (+)
Type: CAZyme
Location: 48418 - 49413 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.