Cluster: HRGMv2_0424_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0424
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0424_10 | HRGMv2_0424_10_12 | 9138 | 9812 | - | 3.A.1.125.1 |
| STP | HRGMv2_0424_10 | HRGMv2_0424_10_13 | 9944 | 10486 | + | Pribosyltran |
| pfam | HRGMv2_0424_10 | HRGMv2_0424_10_14 | 10529 | 11110 | + | ADK | AAA_17 | AAA_18 | AAA_33 |
| TC | HRGMv2_0424_10 | HRGMv2_0424_10_15 | 11189 | 12847 | - | 2.A.81.1.2 |
| NULL(UNKNOWN) | HRGMv2_0424_10 | HRGMv2_0424_10_16 | 12917 | 13276 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0424_10 | HRGMv2_0424_10_17 | 13629 | 15065 | + | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | HRGMv2_0424_10 | HRGMv2_0424_10_18 | 15062 | 16282 | + | GT4 |
Gene ID: HRGMv2_0424_10_12
Type: TC
Location: 9138 - 9812 (-)
Type: TC
Location: 9138 - 9812 (-)
Gene ID: HRGMv2_0424_10_13
Type: STP
Location: 9944 - 10486 (+)
Type: STP
Location: 9944 - 10486 (+)
Gene ID: HRGMv2_0424_10_14
Type: pfam
Location: 10529 - 11110 (+)
Type: pfam
Location: 10529 - 11110 (+)
Gene ID: HRGMv2_0424_10_15
Type: TC
Location: 11189 - 12847 (-)
Type: TC
Location: 11189 - 12847 (-)
Gene ID: HRGMv2_0424_10_16
Type:
Location: 12917 - 13276 (-)
Type:
Location: 12917 - 13276 (-)
Gene ID: HRGMv2_0424_10_17
Type: pfam
Location: 13629 - 15065 (+)
Type: pfam
Location: 13629 - 15065 (+)
Gene ID: HRGMv2_0424_10_18
Type: CAZyme
Location: 15062 - 16282 (+)
Type: CAZyme
Location: 15062 - 16282 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.