Cluster: HRGMv2_0424_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0424
- CGC Family ID: CGCFAM_02546
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0424_14 | HRGMv2_0424_14_4 | 1238 | 3946 | - | 3.A.3.2.14 |
| peptidase | HRGMv2_0424_14 | HRGMv2_0424_14_5 | 3958 | 5316 | - | M38.UNW |
| CAZyme | HRGMv2_0424_14 | HRGMv2_0424_14_6 | 5313 | 6086 | - | GT2 |
| pfam | HRGMv2_0424_14 | HRGMv2_0424_14_7 | 6227 | 8266 | + | tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | Anticodon_3 |
| NULL(UNKNOWN) | HRGMv2_0424_14 | HRGMv2_0424_14_8 | 8343 | 8717 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0424_14 | HRGMv2_0424_14_9 | 8849 | 11272 | - | 9.A.8.1.6 |
Gene ID: HRGMv2_0424_14_4
Type: TC
Location: 1238 - 3946 (-)
Type: TC
Location: 1238 - 3946 (-)
Gene ID: HRGMv2_0424_14_5
Type: peptidase
Location: 3958 - 5316 (-)
Type: peptidase
Location: 3958 - 5316 (-)
Gene ID: HRGMv2_0424_14_6
Type: CAZyme
Location: 5313 - 6086 (-)
Type: CAZyme
Location: 5313 - 6086 (-)
Gene ID: HRGMv2_0424_14_7
Type: pfam
Location: 6227 - 8266 (+)
Type: pfam
Location: 6227 - 8266 (+)
Gene ID: HRGMv2_0424_14_8
Type:
Location: 8343 - 8717 (-)
Type:
Location: 8343 - 8717 (-)
Gene ID: HRGMv2_0424_14_9
Type: TC
Location: 8849 - 11272 (-)
Type: TC
Location: 8849 - 11272 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.