Cluster: HRGMv2_0420_CGC7
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0420
- CGC Family ID: CGCFAM_00574
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0420_4 | HRGMv2_0420_4_41 | 60443 | 61921 | - | 2.A.1.1.3 |
| pfam | HRGMv2_0420_4 | HRGMv2_0420_4_42 | 62016 | 63335 | - | AP_endonuc_2 |
| pfam | HRGMv2_0420_4 | HRGMv2_0420_4_43 | 63373 | 64860 | - | FGGY_N | FGGY_C |
| CAZyme | HRGMv2_0420_4 | HRGMv2_0420_4_44 | 64873 | 66387 | - | GH5_4 |
| NULL(UNKNOWN) | HRGMv2_0420_4 | HRGMv2_0420_4_45 | 66456 | 67907 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0420_4 | HRGMv2_0420_4_46 | 67930 | 69594 | - | 8.A.46.1.2 |
| TC | HRGMv2_0420_4 | HRGMv2_0420_4_47 | 69667 | 72843 | - | 1.B.14.6.1 |
| TF | HRGMv2_0420_4 | HRGMv2_0420_4_48 | 73221 | 77243 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0420_4 | HRGMv2_0420_4_49 | 77438 | 80269 | + | GH31_4 |
| CAZyme | HRGMv2_0420_4 | HRGMv2_0420_4_50 | 80301 | 82796 | + | GH2 |
| CAZyme | HRGMv2_0420_4 | HRGMv2_0420_4_51 | 82809 | 85073 | + | GH3 |
| CAZyme | HRGMv2_0420_4 | HRGMv2_0420_4_52 | 85641 | 87287 | + | GH97 |
| STP | HRGMv2_0420_4 | HRGMv2_0420_4_53 | 87337 | 87840 | + | Sigma70_r2 | Sigma70_r4_2 |
| NULL(UNKNOWN) | HRGMv2_0420_4 | HRGMv2_0420_4_54 | 87843 | 88427 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0420_4 | HRGMv2_0420_4_55 | 88367 | 90742 | - | GH35 |
| NULL(UNKNOWN) | HRGMv2_0420_4 | HRGMv2_0420_4_56 | 90890 | 91264 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0420_4 | HRGMv2_0420_4_57 | 91329 | 91910 | - | ACPS |
| TC | HRGMv2_0420_4 | HRGMv2_0420_4_58 | 91907 | 99163 | - | 4.C.1.1.6 |
Gene ID: HRGMv2_0420_4_41
Type: TC
Location: 60443 - 61921 (-)
Type: TC
Location: 60443 - 61921 (-)
Gene ID: HRGMv2_0420_4_42
Type: pfam
Location: 62016 - 63335 (-)
Type: pfam
Location: 62016 - 63335 (-)
Gene ID: HRGMv2_0420_4_43
Type: pfam
Location: 63373 - 64860 (-)
Type: pfam
Location: 63373 - 64860 (-)
Gene ID: HRGMv2_0420_4_44
Type: CAZyme
Location: 64873 - 66387 (-)
Type: CAZyme
Location: 64873 - 66387 (-)
Gene ID: HRGMv2_0420_4_45
Type:
Location: 66456 - 67907 (-)
Type:
Location: 66456 - 67907 (-)
Gene ID: HRGMv2_0420_4_46
Type: TC
Location: 67930 - 69594 (-)
Type: TC
Location: 67930 - 69594 (-)
Gene ID: HRGMv2_0420_4_47
Type: TC
Location: 69667 - 72843 (-)
Type: TC
Location: 69667 - 72843 (-)
Gene ID: HRGMv2_0420_4_48
Type: TF
Location: 73221 - 77243 (+)
Type: TF
Location: 73221 - 77243 (+)
Gene ID: HRGMv2_0420_4_49
Type: CAZyme
Location: 77438 - 80269 (+)
Type: CAZyme
Location: 77438 - 80269 (+)
Gene ID: HRGMv2_0420_4_50
Type: CAZyme
Location: 80301 - 82796 (+)
Type: CAZyme
Location: 80301 - 82796 (+)
Gene ID: HRGMv2_0420_4_51
Type: CAZyme
Location: 82809 - 85073 (+)
Type: CAZyme
Location: 82809 - 85073 (+)
Gene ID: HRGMv2_0420_4_52
Type: CAZyme
Location: 85641 - 87287 (+)
Type: CAZyme
Location: 85641 - 87287 (+)
Gene ID: HRGMv2_0420_4_53
Type: STP
Location: 87337 - 87840 (+)
Type: STP
Location: 87337 - 87840 (+)
Gene ID: HRGMv2_0420_4_54
Type:
Location: 87843 - 88427 (+)
Type:
Location: 87843 - 88427 (+)
Gene ID: HRGMv2_0420_4_55
Type: CAZyme
Location: 88367 - 90742 (-)
Type: CAZyme
Location: 88367 - 90742 (-)
Gene ID: HRGMv2_0420_4_56
Type:
Location: 90890 - 91264 (+)
Type:
Location: 90890 - 91264 (+)
Gene ID: HRGMv2_0420_4_57
Type: pfam
Location: 91329 - 91910 (-)
Type: pfam
Location: 91329 - 91910 (-)
Gene ID: HRGMv2_0420_4_58
Type: TC
Location: 91907 - 99163 (-)
Type: TC
Location: 91907 - 99163 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900760815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.