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Cluster: HRGMv2_0420_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0420_16 HRGMv2_0420_16_3 2934 4061 + 9.B.146.1.4
pfam HRGMv2_0420_16 HRGMv2_0420_16_4 4101 4952 + Poly_export | SLBB_2
TC HRGMv2_0420_16 HRGMv2_0420_16_5 5067 7508 + 8.A.3.3.3
pfam HRGMv2_0420_16 HRGMv2_0420_16_6 7530 8255 + CpsB_CapC
pfam HRGMv2_0420_16 HRGMv2_0420_16_7 8344 11106 + tRNA-synt_1 | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2
CAZyme HRGMv2_0420_16 HRGMv2_0420_16_8 11118 12515 + GH13
TC HRGMv2_0420_16 HRGMv2_0420_16_9 12515 12886 + 1.A.43.1.6
Gene ID: HRGMv2_0420_16_3
Type: TC
Location: 2934 - 4061 (+)
Gene ID: HRGMv2_0420_16_4
Type: pfam
Location: 4101 - 4952 (+)
Gene ID: HRGMv2_0420_16_5
Type: TC
Location: 5067 - 7508 (+)
Gene ID: HRGMv2_0420_16_6
Type: pfam
Location: 7530 - 8255 (+)
Gene ID: HRGMv2_0420_16_7
Type: pfam
Location: 8344 - 11106 (+)
Gene ID: HRGMv2_0420_16_8
Type: CAZyme
Location: 11118 - 12515 (+)
Gene ID: HRGMv2_0420_16_9
Type: TC
Location: 12515 - 12886 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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