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Cluster: HRGMv2_0420_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0420_1 HRGMv2_0420_1_15 18006 19175 - 3.B.1.1.3
TC HRGMv2_0420_1 HRGMv2_0420_1_16 19196 19639 - 3.B.1.1.1
pfam HRGMv2_0420_1 HRGMv2_0420_1_17 19655 20254 - OAD_gamma
TC HRGMv2_0420_1 HRGMv2_0420_1_18 20281 21834 - 3.B.1.1.2
STP HRGMv2_0420_1 HRGMv2_0420_1_19 21859 22278 - Glyoxalase
pfam HRGMv2_0420_1 HRGMv2_0420_1_20 22600 23601 + Hexapep | Hexapep | LpxD
CAZyme HRGMv2_0420_1 HRGMv2_0420_1_21 23611 24993 + CE11
Gene ID: HRGMv2_0420_1_15
Type: TC
Location: 18006 - 19175 (-)
Gene ID: HRGMv2_0420_1_16
Type: TC
Location: 19196 - 19639 (-)
Gene ID: HRGMv2_0420_1_17
Type: pfam
Location: 19655 - 20254 (-)
Gene ID: HRGMv2_0420_1_18
Type: TC
Location: 20281 - 21834 (-)
Gene ID: HRGMv2_0420_1_19
Type: STP
Location: 21859 - 22278 (-)
Gene ID: HRGMv2_0420_1_20
Type: pfam
Location: 22600 - 23601 (+)
Gene ID: HRGMv2_0420_1_21
Type: CAZyme
Location: 23611 - 24993 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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