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Cluster: HRGMv2_0415_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0415_23 HRGMv2_0415_23_16 19088 21532 - 1.B.18.1.2
pfam HRGMv2_0415_23 HRGMv2_0415_23_17 21529 22689 - Epimerase_2
CAZyme HRGMv2_0415_23 HRGMv2_0415_23_18 22701 23408 - GT26
pfam HRGMv2_0415_23 HRGMv2_0415_23_19 23398 24408 - Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_1_4
NULL(UNKNOWN) HRGMv2_0415_23 HRGMv2_0415_23_20 24405 25571 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0415_23 HRGMv2_0415_23_21 25585 26667 - GT4
CAZyme HRGMv2_0415_23 HRGMv2_0415_23_22 26679 27773 - GT4
pfam HRGMv2_0415_23 HRGMv2_0415_23_23 27748 29025 - Wzy_C
CAZyme HRGMv2_0415_23 HRGMv2_0415_23_24 29027 29911 - GT2
pfam HRGMv2_0415_23 HRGMv2_0415_23_25 29913 31001 - GLF | NAD_binding_8
TC HRGMv2_0415_23 HRGMv2_0415_23_26 30998 32476 - 2.A.66.2.22
pfam HRGMv2_0415_23 HRGMv2_0415_23_27 32479 33717 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC HRGMv2_0415_23 HRGMv2_0415_23_28 33699 34835 - 9.B.146.1.4
Gene ID: HRGMv2_0415_23_16
Type: TC
Location: 19088 - 21532 (-)
Gene ID: HRGMv2_0415_23_17
Type: pfam
Location: 21529 - 22689 (-)
Gene ID: HRGMv2_0415_23_18
Type: CAZyme
Location: 22701 - 23408 (-)
Gene ID: HRGMv2_0415_23_19
Type: pfam
Location: 23398 - 24408 (-)
Gene ID: HRGMv2_0415_23_20
Type:
Location: 24405 - 25571 (-)
Gene ID: HRGMv2_0415_23_21
Type: CAZyme
Location: 25585 - 26667 (-)
Gene ID: HRGMv2_0415_23_22
Type: CAZyme
Location: 26679 - 27773 (-)
Gene ID: HRGMv2_0415_23_23
Type: pfam
Location: 27748 - 29025 (-)
Gene ID: HRGMv2_0415_23_24
Type: CAZyme
Location: 29027 - 29911 (-)
Gene ID: HRGMv2_0415_23_25
Type: pfam
Location: 29913 - 31001 (-)
Gene ID: HRGMv2_0415_23_26
Type: TC
Location: 30998 - 32476 (-)
Gene ID: HRGMv2_0415_23_27
Type: pfam
Location: 32479 - 33717 (-)
Gene ID: HRGMv2_0415_23_28
Type: TC
Location: 33699 - 34835 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0415_23_16 vegetarian > vegan 1.05515 0.00241

🧭 Explore Read Mapping of CGC

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