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Cluster: HRGMv2_0402_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0402_5 HRGMv2_0402_5_52 55529 58105 + GH105 | GH28
CAZyme HRGMv2_0402_5 HRGMv2_0402_5_53 58188 59951 + PL1_2
NULL(UNKNOWN) HRGMv2_0402_5 HRGMv2_0402_5_54 60122 61204 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0402_5 HRGMv2_0402_5_55 61775 64351 - GH3
NULL(UNKNOWN) HRGMv2_0402_5 HRGMv2_0402_5_56 64474 64575 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0402_5 HRGMv2_0402_5_57 64758 66896 - PL1_2
pfam HRGMv2_0402_5 HRGMv2_0402_5_58 67064 68758 - DUF5123
pfam HRGMv2_0402_5 HRGMv2_0402_5_59 68780 70735 - SusD_RagB | SusD-like_3
TC HRGMv2_0402_5 HRGMv2_0402_5_60 70774 74010 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0402_5 HRGMv2_0402_5_61 74053 74187 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0402_5 HRGMv2_0402_5_62 74403 77591 - CE8
Gene ID: HRGMv2_0402_5_52
Type: CAZyme
Location: 55529 - 58105 (+)
Gene ID: HRGMv2_0402_5_53
Type: CAZyme
Location: 58188 - 59951 (+)
Gene ID: HRGMv2_0402_5_54
Type:
Location: 60122 - 61204 (+)
Gene ID: HRGMv2_0402_5_55
Type: CAZyme
Location: 61775 - 64351 (-)
Gene ID: HRGMv2_0402_5_56
Type:
Location: 64474 - 64575 (+)
Gene ID: HRGMv2_0402_5_57
Type: CAZyme
Location: 64758 - 66896 (-)
Gene ID: HRGMv2_0402_5_58
Type: pfam
Location: 67064 - 68758 (-)
Gene ID: HRGMv2_0402_5_59
Type: pfam
Location: 68780 - 70735 (-)
Gene ID: HRGMv2_0402_5_60
Type: TC
Location: 70774 - 74010 (-)
Gene ID: HRGMv2_0402_5_61
Type:
Location: 74053 - 74187 (+)
Gene ID: HRGMv2_0402_5_62
Type: CAZyme
Location: 74403 - 77591 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0402_5_53 vegan > omnivore 1.13614 0.04063

🧭 Explore Read Mapping of CGC

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