Cluster: HRGMv2_0402_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: fructan
- Genome ID: HRGMv2_0402
- CGC Family ID: CGCFAM_00017
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0402_3 | HRGMv2_0402_3_20 | 35887 | 37821 | + | GH32 |
| CAZyme | HRGMv2_0402_3 | HRGMv2_0402_3_21 | 37835 | 40009 | + | GH36 |
| TC | HRGMv2_0402_3 | HRGMv2_0402_3_22 | 40140 | 41297 | + | 2.A.1.7.17 |
| STP | HRGMv2_0402_3 | HRGMv2_0402_3_23 | 41325 | 42215 | + | PfkB |
| NULL(UNKNOWN) | HRGMv2_0402_3 | HRGMv2_0402_3_24 | 42259 | 42456 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0402_3 | HRGMv2_0402_3_25 | 42620 | 45130 | - | GH31_4 |
| NULL(UNKNOWN) | HRGMv2_0402_3 | HRGMv2_0402_3_26 | 45656 | 45796 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0402_3 | HRGMv2_0402_3_27 | 45971 | 49000 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0402_3 | HRGMv2_0402_3_28 | 49027 | 50676 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0402_3 | HRGMv2_0402_3_29 | 50694 | 53717 | + | GH92 |
| pfam | HRGMv2_0402_3 | HRGMv2_0402_3_30 | 53714 | 55930 | + | Metallophos |
| TC | HRGMv2_0402_3 | HRGMv2_0402_3_31 | 56244 | 56897 | - | 1.C.113.1.3 |
Gene ID: HRGMv2_0402_3_20
Type: CAZyme
Location: 35887 - 37821 (+)
Type: CAZyme
Location: 35887 - 37821 (+)
Gene ID: HRGMv2_0402_3_21
Type: CAZyme
Location: 37835 - 40009 (+)
Type: CAZyme
Location: 37835 - 40009 (+)
Gene ID: HRGMv2_0402_3_22
Type: TC
Location: 40140 - 41297 (+)
Type: TC
Location: 40140 - 41297 (+)
Gene ID: HRGMv2_0402_3_23
Type: STP
Location: 41325 - 42215 (+)
Type: STP
Location: 41325 - 42215 (+)
Gene ID: HRGMv2_0402_3_24
Type:
Location: 42259 - 42456 (-)
Type:
Location: 42259 - 42456 (-)
Gene ID: HRGMv2_0402_3_25
Type: CAZyme
Location: 42620 - 45130 (-)
Type: CAZyme
Location: 42620 - 45130 (-)
Gene ID: HRGMv2_0402_3_26
Type:
Location: 45656 - 45796 (-)
Type:
Location: 45656 - 45796 (-)
Gene ID: HRGMv2_0402_3_27
Type: TC
Location: 45971 - 49000 (+)
Type: TC
Location: 45971 - 49000 (+)
Gene ID: HRGMv2_0402_3_28
Type: pfam
Location: 49027 - 50676 (+)
Type: pfam
Location: 49027 - 50676 (+)
Gene ID: HRGMv2_0402_3_29
Type: CAZyme
Location: 50694 - 53717 (+)
Type: CAZyme
Location: 50694 - 53717 (+)
Gene ID: HRGMv2_0402_3_30
Type: pfam
Location: 53714 - 55930 (+)
Type: pfam
Location: 53714 - 55930 (+)
Gene ID: HRGMv2_0402_3_31
Type: TC
Location: 56244 - 56897 (-)
Type: TC
Location: 56244 - 56897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.