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Cluster: HRGMv2_0402_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0402_40 HRGMv2_0402_40_16 14652 16565 - GH13_46
CAZyme HRGMv2_0402_40 HRGMv2_0402_40_17 16633 18546 - GH13_14
CAZyme HRGMv2_0402_40 HRGMv2_0402_40_18 18666 20786 - GH97
CAZyme HRGMv2_0402_40 HRGMv2_0402_40_19 20893 23586 - GH77
TC HRGMv2_0402_40 HRGMv2_0402_40_20 23795 24490 - 9.B.196.1.2
NULL(UNKNOWN) HRGMv2_0402_40 HRGMv2_0402_40_21 24718 25308 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0402_40 HRGMv2_0402_40_22 25340 25747 + DUF4878
CAZyme HRGMv2_0402_40 HRGMv2_0402_40_23 25846 27882 - GH13_6
Gene ID: HRGMv2_0402_40_16
Type: CAZyme
Location: 14652 - 16565 (-)
Gene ID: HRGMv2_0402_40_17
Type: CAZyme
Location: 16633 - 18546 (-)
Gene ID: HRGMv2_0402_40_18
Type: CAZyme
Location: 18666 - 20786 (-)
Gene ID: HRGMv2_0402_40_19
Type: CAZyme
Location: 20893 - 23586 (-)
Gene ID: HRGMv2_0402_40_20
Type: TC
Location: 23795 - 24490 (-)
Gene ID: HRGMv2_0402_40_21
Type:
Location: 24718 - 25308 (+)
Gene ID: HRGMv2_0402_40_22
Type: pfam
Location: 25340 - 25747 (+)
Gene ID: HRGMv2_0402_40_23
Type: CAZyme
Location: 25846 - 27882 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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