Cluster: HRGMv2_0402_CGC27
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_0402
- CGC Family ID: CGCFAM_03865
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0402_35 | HRGMv2_0402_35_2 | 719 | 3550 | + | 1.B.42.1.8 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_3 | 4070 | 5479 | - | CE20 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_4 | 5514 | 8660 | - | GH106 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_5 | 8660 | 11470 | - | GH2 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_6 | 11482 | 14580 | - | GH2 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_7 | 14905 | 18948 | - | CBM57 | CBM97 | GH137 | GH2 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_8 | 18970 | 21609 | - | GH138 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_9 | 21606 | 23687 | - | GH78 |
| TC | HRGMv2_0402_35 | HRGMv2_0402_35_10 | 23671 | 25047 | - | 2.A.1.1.74 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_11 | 25110 | 26870 | - | GH141 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_12 | 26849 | 28930 | - | GH127 |
| pfam | HRGMv2_0402_35 | HRGMv2_0402_35_13 | 28975 | 29640 | - | DUF3826 |
| pfam | HRGMv2_0402_35 | HRGMv2_0402_35_14 | 29637 | 30503 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_0402_35 | HRGMv2_0402_35_15 | 30874 | 33852 | - | GH115 |
| pfam | HRGMv2_0402_35 | HRGMv2_0402_35_16 | 34099 | 36045 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0402_35 | HRGMv2_0402_35_17 | 36058 | 37476 | - | 1.B.14.6.2 |
| TC | HRGMv2_0402_35 | HRGMv2_0402_35_18 | 37489 | 39204 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0402_35_2
Type: TC
Location: 719 - 3550 (+)
Type: TC
Location: 719 - 3550 (+)
Gene ID: HRGMv2_0402_35_3
Type: CAZyme
Location: 4070 - 5479 (-)
Type: CAZyme
Location: 4070 - 5479 (-)
Gene ID: HRGMv2_0402_35_4
Type: CAZyme
Location: 5514 - 8660 (-)
Type: CAZyme
Location: 5514 - 8660 (-)
Gene ID: HRGMv2_0402_35_5
Type: CAZyme
Location: 8660 - 11470 (-)
Type: CAZyme
Location: 8660 - 11470 (-)
Gene ID: HRGMv2_0402_35_6
Type: CAZyme
Location: 11482 - 14580 (-)
Type: CAZyme
Location: 11482 - 14580 (-)
Gene ID: HRGMv2_0402_35_7
Type: CAZyme
Location: 14905 - 18948 (-)
Type: CAZyme
Location: 14905 - 18948 (-)
Gene ID: HRGMv2_0402_35_8
Type: CAZyme
Location: 18970 - 21609 (-)
Type: CAZyme
Location: 18970 - 21609 (-)
Gene ID: HRGMv2_0402_35_9
Type: CAZyme
Location: 21606 - 23687 (-)
Type: CAZyme
Location: 21606 - 23687 (-)
Gene ID: HRGMv2_0402_35_10
Type: TC
Location: 23671 - 25047 (-)
Type: TC
Location: 23671 - 25047 (-)
Gene ID: HRGMv2_0402_35_11
Type: CAZyme
Location: 25110 - 26870 (-)
Type: CAZyme
Location: 25110 - 26870 (-)
Gene ID: HRGMv2_0402_35_12
Type: CAZyme
Location: 26849 - 28930 (-)
Type: CAZyme
Location: 26849 - 28930 (-)
Gene ID: HRGMv2_0402_35_13
Type: pfam
Location: 28975 - 29640 (-)
Type: pfam
Location: 28975 - 29640 (-)
Gene ID: HRGMv2_0402_35_14
Type: pfam
Location: 29637 - 30503 (-)
Type: pfam
Location: 29637 - 30503 (-)
Gene ID: HRGMv2_0402_35_15
Type: CAZyme
Location: 30874 - 33852 (-)
Type: CAZyme
Location: 30874 - 33852 (-)
Gene ID: HRGMv2_0402_35_16
Type: pfam
Location: 34099 - 36045 (-)
Type: pfam
Location: 34099 - 36045 (-)
Gene ID: HRGMv2_0402_35_17
Type: TC
Location: 36058 - 37476 (-)
Type: TC
Location: 36058 - 37476 (-)
Gene ID: HRGMv2_0402_35_18
Type: TC
Location: 37489 - 39204 (-)
Type: TC
Location: 37489 - 39204 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.