Cluster: HRGMv2_0402_CGC24
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_0402
- CGC Family ID: CGCFAM_00044
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0402_28 | HRGMv2_0402_28_14 | 18569 | 19534 | - | GH43_1 |
| CAZyme | HRGMv2_0402_28 | HRGMv2_0402_28_15 | 19577 | 20698 | - | GH10 |
| TC | HRGMv2_0402_28 | HRGMv2_0402_28_16 | 20709 | 22130 | - | 2.A.2.3.2 |
| pfam | HRGMv2_0402_28 | HRGMv2_0402_28_17 | 22177 | 23358 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0402_28 | HRGMv2_0402_28_18 | 23600 | 26113 | + | GH115 |
| TF | HRGMv2_0402_28 | HRGMv2_0402_28_19 | 26196 | 30101 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0402_28 | HRGMv2_0402_28_20 | 30446 | 32038 | + | GH67 |
| CAZyme | HRGMv2_0402_28 | HRGMv2_0402_28_21 | 32051 | 33820 | + | GH35 |
| TC | HRGMv2_0402_28 | HRGMv2_0402_28_22 | 34865 | 38029 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0402_28 | HRGMv2_0402_28_23 | 38081 | 39793 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0402_28 | HRGMv2_0402_28_24 | 39831 | 41225 | + | SGBP_B_XBD |
| CAZyme | HRGMv2_0402_28 | HRGMv2_0402_28_25 | 41304 | 43115 | + | CBM4 | GH10 |
Gene ID: HRGMv2_0402_28_14
Type: CAZyme
Location: 18569 - 19534 (-)
Type: CAZyme
Location: 18569 - 19534 (-)
Gene ID: HRGMv2_0402_28_15
Type: CAZyme
Location: 19577 - 20698 (-)
Type: CAZyme
Location: 19577 - 20698 (-)
Gene ID: HRGMv2_0402_28_16
Type: TC
Location: 20709 - 22130 (-)
Type: TC
Location: 20709 - 22130 (-)
Gene ID: HRGMv2_0402_28_17
Type: pfam
Location: 22177 - 23358 (-)
Type: pfam
Location: 22177 - 23358 (-)
Gene ID: HRGMv2_0402_28_18
Type: CAZyme
Location: 23600 - 26113 (+)
Type: CAZyme
Location: 23600 - 26113 (+)
Gene ID: HRGMv2_0402_28_19
Type: TF
Location: 26196 - 30101 (+)
Type: TF
Location: 26196 - 30101 (+)
Gene ID: HRGMv2_0402_28_20
Type: CAZyme
Location: 30446 - 32038 (+)
Type: CAZyme
Location: 30446 - 32038 (+)
Gene ID: HRGMv2_0402_28_21
Type: CAZyme
Location: 32051 - 33820 (+)
Type: CAZyme
Location: 32051 - 33820 (+)
Gene ID: HRGMv2_0402_28_22
Type: TC
Location: 34865 - 38029 (+)
Type: TC
Location: 34865 - 38029 (+)
Gene ID: HRGMv2_0402_28_23
Type: pfam
Location: 38081 - 39793 (+)
Type: pfam
Location: 38081 - 39793 (+)
Gene ID: HRGMv2_0402_28_24
Type: pfam
Location: 39831 - 41225 (+)
Type: pfam
Location: 39831 - 41225 (+)
Gene ID: HRGMv2_0402_28_25
Type: CAZyme
Location: 41304 - 43115 (+)
Type: CAZyme
Location: 41304 - 43115 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.