Cluster: HRGMv2_0402_CGC21
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0402
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0402_24 | HRGMv2_0402_24_22 | 31004 | 32011 | + | 1.I.1.1.3 |
| pfam | HRGMv2_0402_24 | HRGMv2_0402_24_23 | 32742 | 33524 | - | S6PP | Hydrolase_3 |
| pfam | HRGMv2_0402_24 | HRGMv2_0402_24_24 | 33912 | 34622 | + | DNA_alkylation |
| CAZyme | HRGMv2_0402_24 | HRGMv2_0402_24_25 | 34858 | 36006 | + | PL10_1 |
| pfam | HRGMv2_0402_24 | HRGMv2_0402_24_26 | 36003 | 36734 | + | GYF_2 |
| TC | HRGMv2_0402_24 | HRGMv2_0402_24_27 | 37171 | 38577 | + | 2.A.66.1.37 |
| STP | HRGMv2_0402_24 | HRGMv2_0402_24_28 | 38744 | 39340 | + | cNMP_binding |
| TC | HRGMv2_0402_24 | HRGMv2_0402_24_29 | 39824 | 40984 | + | 2.A.1.2.14 |
Gene ID: HRGMv2_0402_24_22
Type: TC
Location: 31004 - 32011 (+)
Type: TC
Location: 31004 - 32011 (+)
Gene ID: HRGMv2_0402_24_23
Type: pfam
Location: 32742 - 33524 (-)
Type: pfam
Location: 32742 - 33524 (-)
Gene ID: HRGMv2_0402_24_24
Type: pfam
Location: 33912 - 34622 (+)
Type: pfam
Location: 33912 - 34622 (+)
Gene ID: HRGMv2_0402_24_25
Type: CAZyme
Location: 34858 - 36006 (+)
Type: CAZyme
Location: 34858 - 36006 (+)
Gene ID: HRGMv2_0402_24_26
Type: pfam
Location: 36003 - 36734 (+)
Type: pfam
Location: 36003 - 36734 (+)
Gene ID: HRGMv2_0402_24_27
Type: TC
Location: 37171 - 38577 (+)
Type: TC
Location: 37171 - 38577 (+)
Gene ID: HRGMv2_0402_24_28
Type: STP
Location: 38744 - 39340 (+)
Type: STP
Location: 38744 - 39340 (+)
Gene ID: HRGMv2_0402_24_29
Type: TC
Location: 39824 - 40984 (+)
Type: TC
Location: 39824 - 40984 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0402_24_22 | vegetarian > omnivore | 1.15422 | 0.02354 |
| HRGMv2_0402_24_22 | vegetarian > vegan | 1.53995 | 0.00842 |
| HRGMv2_0402_24_23 | vegetarian > omnivore | 1.41849 | 0.01857 |
| HRGMv2_0402_24_25 | vegetarian > vegan | 1.16088 | 0.01320 |
| HRGMv2_0402_24_26 | vegetarian > omnivore | 1.36307 | 0.03649 |
| HRGMv2_0402_24_26 | vegetarian > vegan | 1.24161 | 0.01320 |
| HRGMv2_0402_24_27 | vegetarian > omnivore | 1.59372 | 0.04821 |
| HRGMv2_0402_24_27 | vegetarian > vegan | 1.08721 | 0.01320 |
| HRGMv2_0402_24_28 | vegetarian > omnivore | 1.35728 | 0.04821 |
| HRGMv2_0402_24_28 | vegetarian > vegan | 1.15379 | 0.01320 |
| HRGMv2_0402_24_29 | vegetarian > vegan | 1.13300 | 0.01320 |