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Cluster: HRGMv2_0402_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0402_1 HRGMv2_0402_1_69 64972 66516 - PL1_2
NULL(UNKNOWN) HRGMv2_0402_1 HRGMv2_0402_1_70 66852 67451 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0402_1 HRGMv2_0402_1_71 67945 69012 + GH43_29
peptidase HRGMv2_0402_1 HRGMv2_0402_1_72 69231 70586 - M20.UPF
NULL(UNKNOWN) HRGMv2_0402_1 HRGMv2_0402_1_73 70801 71019 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0402_1 HRGMv2_0402_1_74 71343 72524 - 2.A.1.36.3
TC HRGMv2_0402_1 HRGMv2_0402_1_75 72538 72864 - 2.A.7.1.4
Gene ID: HRGMv2_0402_1_69
Type: CAZyme
Location: 64972 - 66516 (-)
Gene ID: HRGMv2_0402_1_70
Type:
Location: 66852 - 67451 (-)
Gene ID: HRGMv2_0402_1_71
Type: CAZyme
Location: 67945 - 69012 (+)
Gene ID: HRGMv2_0402_1_72
Type: peptidase
Location: 69231 - 70586 (-)
Gene ID: HRGMv2_0402_1_73
Type:
Location: 70801 - 71019 (-)
Gene ID: HRGMv2_0402_1_74
Type: TC
Location: 71343 - 72524 (-)
Gene ID: HRGMv2_0402_1_75
Type: TC
Location: 72538 - 72864 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0402_1_69 vegetarian > omnivore 1.04972 0.04821
HRGMv2_0402_1_72 vegetarian > vegan 1.05626 0.01320
HRGMv2_0402_1_73 vegetarian > vegan 1.07016 0.01320

🧭 Explore Read Mapping of CGC

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