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Cluster: HRGMv2_0402_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0402_11 HRGMv2_0402_11_44 52522 53676 - GT19
pfam HRGMv2_0402_11 HRGMv2_0402_11_45 53760 54536 - SurE
TC HRGMv2_0402_11 HRGMv2_0402_11_46 54691 55455 + 8.A.3.2.3
pfam HRGMv2_0402_11 HRGMv2_0402_11_47 55463 56359 + ParBc | HTH_ParB | ParB_dimer
pfam HRGMv2_0402_11 HRGMv2_0402_11_48 56369 57139 + DUF5683
CAZyme HRGMv2_0402_11 HRGMv2_0402_11_49 57182 58522 + GH23
STP HRGMv2_0402_11 HRGMv2_0402_11_50 58571 60841 + ACT | HD
CAZyme HRGMv2_0402_11 HRGMv2_0402_11_51 60946 61923 + CE8
TC HRGMv2_0402_11 HRGMv2_0402_11_52 62638 65877 + 1.B.14.6.1
TC HRGMv2_0402_11 HRGMv2_0402_11_53 65899 67722 + 8.A.46.1.6
Gene ID: HRGMv2_0402_11_44
Type: CAZyme
Location: 52522 - 53676 (-)
Gene ID: HRGMv2_0402_11_45
Type: pfam
Location: 53760 - 54536 (-)
Gene ID: HRGMv2_0402_11_46
Type: TC
Location: 54691 - 55455 (+)
Gene ID: HRGMv2_0402_11_47
Type: pfam
Location: 55463 - 56359 (+)
Gene ID: HRGMv2_0402_11_48
Type: pfam
Location: 56369 - 57139 (+)
Gene ID: HRGMv2_0402_11_49
Type: CAZyme
Location: 57182 - 58522 (+)
Gene ID: HRGMv2_0402_11_50
Type: STP
Location: 58571 - 60841 (+)
Gene ID: HRGMv2_0402_11_51
Type: CAZyme
Location: 60946 - 61923 (+)
Gene ID: HRGMv2_0402_11_52
Type: TC
Location: 62638 - 65877 (+)
Gene ID: HRGMv2_0402_11_53
Type: TC
Location: 65899 - 67722 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0402_11_51 vegetarian > vegan 2.20367 0.01320

🧭 Explore Read Mapping of CGC

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