Cluster: HRGMv2_0402_CGC10
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 13
- Substrate:
- Genome ID: HRGMv2_0402
- CGC Family ID: CGCFAM_00217
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_23 | 37581 | 40730 | + | GH2 |
| TC | HRGMv2_0402_8 | HRGMv2_0402_8_24 | 41329 | 44607 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0402_8 | HRGMv2_0402_8_25 | 44656 | 46704 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_26 | 46927 | 47826 | + | GH16_3 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_27 | 47903 | 49033 | + | GH43_24 |
| TF | HRGMv2_0402_8 | HRGMv2_0402_8_28 | 49204 | 53160 | + | HTH_AraC |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_29 | 53252 | 54475 | + | GH154 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_30 | 54490 | 55806 | + | PL42 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_31 | 55898 | 57022 | + | GH105 |
| TF | HRGMv2_0402_8 | HRGMv2_0402_8_32 | 57458 | 61504 | - | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0402_8 | HRGMv2_0402_8_33 | 61811 | 63277 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0402_8 | HRGMv2_0402_8_34 | 63327 | 66332 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0402_8 | HRGMv2_0402_8_35 | 66394 | 67983 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_36 | 68116 | 69720 | + | GH30_4 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_37 | 69984 | 71564 | + | GH30_4 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_38 | 71702 | 74053 | + | GH35 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_39 | 74243 | 76156 | + | GH43_19 | GH43_34 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_40 | 76214 | 77239 | + | GH43_17 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_41 | 77326 | 79827 | + | GH51_2 |
| CAZyme | HRGMv2_0402_8 | HRGMv2_0402_8_42 | 79951 | 82200 | + | CE1 |
Gene ID: HRGMv2_0402_8_23
Type: CAZyme
Location: 37581 - 40730 (+)
Type: CAZyme
Location: 37581 - 40730 (+)
Gene ID: HRGMv2_0402_8_24
Type: TC
Location: 41329 - 44607 (+)
Type: TC
Location: 41329 - 44607 (+)
Gene ID: HRGMv2_0402_8_25
Type: pfam
Location: 44656 - 46704 (+)
Type: pfam
Location: 44656 - 46704 (+)
Gene ID: HRGMv2_0402_8_26
Type: CAZyme
Location: 46927 - 47826 (+)
Type: CAZyme
Location: 46927 - 47826 (+)
Gene ID: HRGMv2_0402_8_27
Type: CAZyme
Location: 47903 - 49033 (+)
Type: CAZyme
Location: 47903 - 49033 (+)
Gene ID: HRGMv2_0402_8_28
Type: TF
Location: 49204 - 53160 (+)
Type: TF
Location: 49204 - 53160 (+)
Gene ID: HRGMv2_0402_8_29
Type: CAZyme
Location: 53252 - 54475 (+)
Type: CAZyme
Location: 53252 - 54475 (+)
Gene ID: HRGMv2_0402_8_30
Type: CAZyme
Location: 54490 - 55806 (+)
Type: CAZyme
Location: 54490 - 55806 (+)
Gene ID: HRGMv2_0402_8_31
Type: CAZyme
Location: 55898 - 57022 (+)
Type: CAZyme
Location: 55898 - 57022 (+)
Gene ID: HRGMv2_0402_8_32
Type: TF
Location: 57458 - 61504 (-)
Type: TF
Location: 57458 - 61504 (-)
Gene ID: HRGMv2_0402_8_33
Type:
Location: 61811 - 63277 (+)
Type:
Location: 61811 - 63277 (+)
Gene ID: HRGMv2_0402_8_34
Type: TC
Location: 63327 - 66332 (+)
Type: TC
Location: 63327 - 66332 (+)
Gene ID: HRGMv2_0402_8_35
Type: pfam
Location: 66394 - 67983 (+)
Type: pfam
Location: 66394 - 67983 (+)
Gene ID: HRGMv2_0402_8_36
Type: CAZyme
Location: 68116 - 69720 (+)
Type: CAZyme
Location: 68116 - 69720 (+)
Gene ID: HRGMv2_0402_8_37
Type: CAZyme
Location: 69984 - 71564 (+)
Type: CAZyme
Location: 69984 - 71564 (+)
Gene ID: HRGMv2_0402_8_38
Type: CAZyme
Location: 71702 - 74053 (+)
Type: CAZyme
Location: 71702 - 74053 (+)
Gene ID: HRGMv2_0402_8_39
Type: CAZyme
Location: 74243 - 76156 (+)
Type: CAZyme
Location: 74243 - 76156 (+)
Gene ID: HRGMv2_0402_8_40
Type: CAZyme
Location: 76214 - 77239 (+)
Type: CAZyme
Location: 76214 - 77239 (+)
Gene ID: HRGMv2_0402_8_41
Type: CAZyme
Location: 77326 - 79827 (+)
Type: CAZyme
Location: 77326 - 79827 (+)
Gene ID: HRGMv2_0402_8_42
Type: CAZyme
Location: 79951 - 82200 (+)
Type: CAZyme
Location: 79951 - 82200 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.