Cluster: HRGMv2_0402_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0402
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0402_1 | HRGMv2_0402_1_51 | 38665 | 42561 | - | CE8 | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_0402_1 | HRGMv2_0402_1_52 | 42709 | 44097 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0402_1 | HRGMv2_0402_1_53 | 44193 | 46163 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0402_1 | HRGMv2_0402_1_54 | 46228 | 49431 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0402_1_51
Type: CAZyme
Location: 38665 - 42561 (-)
Type: CAZyme
Location: 38665 - 42561 (-)
Gene ID: HRGMv2_0402_1_52
Type:
Location: 42709 - 44097 (-)
Type:
Location: 42709 - 44097 (-)
Gene ID: HRGMv2_0402_1_53
Type: pfam
Location: 44193 - 46163 (-)
Type: pfam
Location: 44193 - 46163 (-)
Gene ID: HRGMv2_0402_1_54
Type: TC
Location: 46228 - 49431 (-)
Type: TC
Location: 46228 - 49431 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0402_1_52 | vegan > omnivore | 1.61795 | 0.03467 |
| HRGMv2_0402_1_52 | vegetarian > omnivore | 2.01536 | 0.00688 |
| HRGMv2_0402_1_53 | vegetarian > omnivore | 1.82233 | 0.01857 |
| HRGMv2_0402_1_54 | vegetarian > omnivore | 1.41355 | 0.04821 |