dbCAN Logo

Cluster: HRGMv2_0401_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0401_1 HRGMv2_0401_1_142 216460 218808 + GH3
peptidase HRGMv2_0401_1 HRGMv2_0401_1_143 219376 220980 + S09.UPW
pfam HRGMv2_0401_1 HRGMv2_0401_1_144 221370 223031 - DUF6377
TC HRGMv2_0401_1 HRGMv2_0401_1_145 223318 224658 - 2.A.66.1.2
pfam HRGMv2_0401_1 HRGMv2_0401_1_146 225055 225480 - HSP20
TC HRGMv2_0401_1 HRGMv2_0401_1_147 226199 226951 - 3.D.10.1.5
TC HRGMv2_0401_1 HRGMv2_0401_1_148 226956 228938 - 3.D.10.1.5
NULL(UNKNOWN) HRGMv2_0401_1 HRGMv2_0401_1_149 228991 229668 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0401_1 HRGMv2_0401_1_150 229907 231778 + 1.C.39.4.5
Gene ID: HRGMv2_0401_1_142
Type: CAZyme
Location: 216460 - 218808 (+)
Gene ID: HRGMv2_0401_1_143
Type: peptidase
Location: 219376 - 220980 (+)
Gene ID: HRGMv2_0401_1_144
Type: pfam
Location: 221370 - 223031 (-)
Gene ID: HRGMv2_0401_1_145
Type: TC
Location: 223318 - 224658 (-)
Gene ID: HRGMv2_0401_1_146
Type: pfam
Location: 225055 - 225480 (-)
Gene ID: HRGMv2_0401_1_147
Type: TC
Location: 226199 - 226951 (-)
Gene ID: HRGMv2_0401_1_148
Type: TC
Location: 226956 - 228938 (-)
Gene ID: HRGMv2_0401_1_149
Type:
Location: 228991 - 229668 (-)
Gene ID: HRGMv2_0401_1_150
Type: TC
Location: 229907 - 231778 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0401_1_146 vegetarian > omnivore 1.04441 0.02605

🧭 Explore Read Mapping of CGC

← Back to Cluster List