dbCAN Logo

Cluster: HRGMv2_0401_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0401_31 HRGMv2_0401_31_22 24221 25771 - 2.A.35.1.3
CAZyme HRGMv2_0401_31 HRGMv2_0401_31_23 26418 28055 + GH29
pfam HRGMv2_0401_31 HRGMv2_0401_31_24 28230 29027 + DUF34_NIF3
pfam HRGMv2_0401_31 HRGMv2_0401_31_25 29032 29889 + Zn_ribbon_9
TC HRGMv2_0401_31 HRGMv2_0401_31_26 30011 31252 + 2.A.1.7.2
Gene ID: HRGMv2_0401_31_22
Type: TC
Location: 24221 - 25771 (-)
Gene ID: HRGMv2_0401_31_23
Type: CAZyme
Location: 26418 - 28055 (+)
Gene ID: HRGMv2_0401_31_24
Type: pfam
Location: 28230 - 29027 (+)
Gene ID: HRGMv2_0401_31_25
Type: pfam
Location: 29032 - 29889 (+)
Gene ID: HRGMv2_0401_31_26
Type: TC
Location: 30011 - 31252 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0401_31_22 vegetarian > vegan 1.14723 0.01548

🧭 Explore Read Mapping of CGC

← Back to Cluster List