Cluster: HRGMv2_0401_CGC31
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0401
- CGC Family ID: CGCFAM_03240
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0401_30 | HRGMv2_0401_30_6 | 7525 | 8634 | + | GT4 |
| sulfatase | HRGMv2_0401_30 | HRGMv2_0401_30_7 | 9064 | 10575 | + | S1_37 |
| pfam | HRGMv2_0401_30 | HRGMv2_0401_30_8 | 10721 | 11233 | + | Biotin_lipoyl |
| TC | HRGMv2_0401_30 | HRGMv2_0401_30_9 | 11239 | 12771 | + | 3.B.1.1.2 |
| NULL(UNKNOWN) | HRGMv2_0401_30 | HRGMv2_0401_30_10 | 12630 | 12965 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0401_30 | HRGMv2_0401_30_11 | 12940 | 13806 | - | LicD |
| TC | HRGMv2_0401_30 | HRGMv2_0401_30_12 | 13945 | 15318 | - | 2.A.25.1.3 |
Gene ID: HRGMv2_0401_30_6
Type: CAZyme
Location: 7525 - 8634 (+)
Type: CAZyme
Location: 7525 - 8634 (+)
Gene ID: HRGMv2_0401_30_7
Type: sulfatase
Location: 9064 - 10575 (+)
Type: sulfatase
Location: 9064 - 10575 (+)
Gene ID: HRGMv2_0401_30_8
Type: pfam
Location: 10721 - 11233 (+)
Type: pfam
Location: 10721 - 11233 (+)
Gene ID: HRGMv2_0401_30_9
Type: TC
Location: 11239 - 12771 (+)
Type: TC
Location: 11239 - 12771 (+)
Gene ID: HRGMv2_0401_30_10
Type:
Location: 12630 - 12965 (-)
Type:
Location: 12630 - 12965 (-)
Gene ID: HRGMv2_0401_30_11
Type: pfam
Location: 12940 - 13806 (-)
Type: pfam
Location: 12940 - 13806 (-)
Gene ID: HRGMv2_0401_30_12
Type: TC
Location: 13945 - 15318 (-)
Type: TC
Location: 13945 - 15318 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0401_30_7 | vegetarian > omnivore | 1.72151 | 0.03420 |
| HRGMv2_0401_30_8 | vegetarian > omnivore | 2.85294 | 0.03420 |
| HRGMv2_0401_30_8 | vegetarian > vegan | 1.53468 | 0.01548 |