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Cluster: HRGMv2_0401_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0401_23 HRGMv2_0401_23_15 17356 20595 - 1.B.14.6.1
CAZyme HRGMv2_0401_23 HRGMv2_0401_23_16 21107 22084 - CE8
STP HRGMv2_0401_23 HRGMv2_0401_23_17 22192 24462 - ACT | HD
CAZyme HRGMv2_0401_23 HRGMv2_0401_23_18 24512 25813 - GH23
pfam HRGMv2_0401_23 HRGMv2_0401_23_19 25888 26664 - DUF5683
pfam HRGMv2_0401_23 HRGMv2_0401_23_20 26674 27570 - ParBc | HTH_ParB | ParB_dimer
TC HRGMv2_0401_23 HRGMv2_0401_23_21 27578 28342 - 8.A.3.2.3
pfam HRGMv2_0401_23 HRGMv2_0401_23_22 28497 29273 + SurE
CAZyme HRGMv2_0401_23 HRGMv2_0401_23_23 29356 30510 + GT19
Gene ID: HRGMv2_0401_23_15
Type: TC
Location: 17356 - 20595 (-)
Gene ID: HRGMv2_0401_23_16
Type: CAZyme
Location: 21107 - 22084 (-)
Gene ID: HRGMv2_0401_23_17
Type: STP
Location: 22192 - 24462 (-)
Gene ID: HRGMv2_0401_23_18
Type: CAZyme
Location: 24512 - 25813 (-)
Gene ID: HRGMv2_0401_23_19
Type: pfam
Location: 25888 - 26664 (-)
Gene ID: HRGMv2_0401_23_20
Type: pfam
Location: 26674 - 27570 (-)
Gene ID: HRGMv2_0401_23_21
Type: TC
Location: 27578 - 28342 (-)
Gene ID: HRGMv2_0401_23_22
Type: pfam
Location: 28497 - 29273 (+)
Gene ID: HRGMv2_0401_23_23
Type: CAZyme
Location: 29356 - 30510 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0401_23_22 vegetarian > vegan 1.05180 0.01548

🧭 Explore Read Mapping of CGC

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