Cluster: HRGMv2_0401_CGC28
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0401
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0401_20 | HRGMv2_0401_20_24 | 30477 | 31637 | - | 2.A.1.2.14 |
| STP | HRGMv2_0401_20 | HRGMv2_0401_20_25 | 32121 | 32717 | - | cNMP_binding |
| TC | HRGMv2_0401_20 | HRGMv2_0401_20_26 | 32884 | 34290 | - | 2.A.66.1.37 |
| pfam | HRGMv2_0401_20 | HRGMv2_0401_20_27 | 34727 | 35458 | - | GYF_2 |
| CAZyme | HRGMv2_0401_20 | HRGMv2_0401_20_28 | 35455 | 36684 | - | PL10_1 |
| pfam | HRGMv2_0401_20 | HRGMv2_0401_20_29 | 36772 | 37482 | - | DNA_alkylation |
| pfam | HRGMv2_0401_20 | HRGMv2_0401_20_30 | 37784 | 38566 | + | S6PP | Hydrolase_3 |
| TC | HRGMv2_0401_20 | HRGMv2_0401_20_31 | 39299 | 40288 | - | 1.I.1.1.3 |
Gene ID: HRGMv2_0401_20_24
Type: TC
Location: 30477 - 31637 (-)
Type: TC
Location: 30477 - 31637 (-)
Gene ID: HRGMv2_0401_20_25
Type: STP
Location: 32121 - 32717 (-)
Type: STP
Location: 32121 - 32717 (-)
Gene ID: HRGMv2_0401_20_26
Type: TC
Location: 32884 - 34290 (-)
Type: TC
Location: 32884 - 34290 (-)
Gene ID: HRGMv2_0401_20_27
Type: pfam
Location: 34727 - 35458 (-)
Type: pfam
Location: 34727 - 35458 (-)
Gene ID: HRGMv2_0401_20_28
Type: CAZyme
Location: 35455 - 36684 (-)
Type: CAZyme
Location: 35455 - 36684 (-)
Gene ID: HRGMv2_0401_20_29
Type: pfam
Location: 36772 - 37482 (-)
Type: pfam
Location: 36772 - 37482 (-)
Gene ID: HRGMv2_0401_20_30
Type: pfam
Location: 37784 - 38566 (+)
Type: pfam
Location: 37784 - 38566 (+)
Gene ID: HRGMv2_0401_20_31
Type: TC
Location: 39299 - 40288 (-)
Type: TC
Location: 39299 - 40288 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0401_20_25 | vegetarian > omnivore | 1.28994 | 0.03420 |
| HRGMv2_0401_20_25 | vegetarian > vegan | 1.18796 | 0.01548 |
| HRGMv2_0401_20_26 | vegetarian > omnivore | 1.52693 | 0.03420 |
| HRGMv2_0401_20_26 | vegetarian > vegan | 1.07162 | 0.01548 |
| HRGMv2_0401_20_27 | vegetarian > omnivore | 1.59420 | 0.03420 |
| HRGMv2_0401_20_27 | vegetarian > vegan | 1.34500 | 0.01548 |
| HRGMv2_0401_20_28 | vegetarian > vegan | 1.17038 | 0.01548 |
| HRGMv2_0401_20_30 | vegetarian > omnivore | 1.41027 | 0.02605 |
| HRGMv2_0401_20_31 | vegetarian > omnivore | 1.17182 | 0.03420 |
| HRGMv2_0401_20_31 | vegetarian > vegan | 1.67656 | 0.01548 |