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Cluster: HRGMv2_0401_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0401_18 HRGMv2_0401_18_25 29402 32584 + CE8
TC HRGMv2_0401_18 HRGMv2_0401_18_26 32975 36211 + 1.B.14.6.1
pfam HRGMv2_0401_18 HRGMv2_0401_18_27 36253 38190 + SusD_RagB | SusD-like_2 | SusD-like_3
pfam HRGMv2_0401_18 HRGMv2_0401_18_28 38212 39909 + DUF4957 | DUF5123
CAZyme HRGMv2_0401_18 HRGMv2_0401_18_29 40193 42151 + GH28
NULL(UNKNOWN) HRGMv2_0401_18 HRGMv2_0401_18_30 42312 42413 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0401_18 HRGMv2_0401_18_31 42670 45246 + GH3
pfam HRGMv2_0401_18 HRGMv2_0401_18_32 45816 47159 - Big_2
CAZyme HRGMv2_0401_18 HRGMv2_0401_18_33 47331 49094 - PL1_2
CAZyme HRGMv2_0401_18 HRGMv2_0401_18_34 49180 51756 - GH105 | GH28
Gene ID: HRGMv2_0401_18_25
Type: CAZyme
Location: 29402 - 32584 (+)
Gene ID: HRGMv2_0401_18_26
Type: TC
Location: 32975 - 36211 (+)
Gene ID: HRGMv2_0401_18_27
Type: pfam
Location: 36253 - 38190 (+)
Gene ID: HRGMv2_0401_18_28
Type: pfam
Location: 38212 - 39909 (+)
Gene ID: HRGMv2_0401_18_29
Type: CAZyme
Location: 40193 - 42151 (+)
Gene ID: HRGMv2_0401_18_30
Type:
Location: 42312 - 42413 (-)
Gene ID: HRGMv2_0401_18_31
Type: CAZyme
Location: 42670 - 45246 (+)
Gene ID: HRGMv2_0401_18_32
Type: pfam
Location: 45816 - 47159 (-)
Gene ID: HRGMv2_0401_18_33
Type: CAZyme
Location: 47331 - 49094 (-)
Gene ID: HRGMv2_0401_18_34
Type: CAZyme
Location: 49180 - 51756 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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