Cluster: HRGMv2_0401_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0401
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0401_18 | HRGMv2_0401_18_4 | 3528 | 4403 | - | 1.A.23.4.1 |
| pfam | HRGMv2_0401_18 | HRGMv2_0401_18_5 | 4704 | 5150 | + | DUF4186 |
| STP | HRGMv2_0401_18 | HRGMv2_0401_18_6 | 5229 | 6584 | - | Pyr_redox_2 |
| TC | HRGMv2_0401_18 | HRGMv2_0401_18_7 | 6832 | 8232 | + | 9.B.18.1.1 |
| CAZyme | HRGMv2_0401_18 | HRGMv2_0401_18_8 | 8433 | 9827 | - | GH28 |
Gene ID: HRGMv2_0401_18_4
Type: TC
Location: 3528 - 4403 (-)
Type: TC
Location: 3528 - 4403 (-)
Gene ID: HRGMv2_0401_18_5
Type: pfam
Location: 4704 - 5150 (+)
Type: pfam
Location: 4704 - 5150 (+)
Gene ID: HRGMv2_0401_18_6
Type: STP
Location: 5229 - 6584 (-)
Type: STP
Location: 5229 - 6584 (-)
Gene ID: HRGMv2_0401_18_7
Type: TC
Location: 6832 - 8232 (+)
Type: TC
Location: 6832 - 8232 (+)
Gene ID: HRGMv2_0401_18_8
Type: CAZyme
Location: 8433 - 9827 (-)
Type: CAZyme
Location: 8433 - 9827 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.