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Cluster: HRGMv2_0401_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0401_14 HRGMv2_0401_14_4 3227 6556 + 1.B.14.6.1
pfam HRGMv2_0401_14 HRGMv2_0401_14_5 6588 8780 + SusD_RagB | SusD-like_3
pfam HRGMv2_0401_14 HRGMv2_0401_14_6 9046 10455 + ThrE | ThrE_2
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_7 10863 13934 + PL29
STP HRGMv2_0401_14 HRGMv2_0401_14_8 14068 14577 + Sigma70_r2 | Sigma70_r4_2
NULL(UNKNOWN) HRGMv2_0401_14 HRGMv2_0401_14_9 14625 14762 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_10 15092 16057 - GH43_1
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_11 16100 17221 - GH10
TC HRGMv2_0401_14 HRGMv2_0401_14_12 17228 18634 - 2.A.2.3.2
pfam HRGMv2_0401_14 HRGMv2_0401_14_13 18695 19876 - Lipase_GDSL | Lipase_GDSL_2
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_14 20118 22631 + GH115
TF HRGMv2_0401_14 HRGMv2_0401_14_15 22714 26628 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_16 26625 28559 + GH67
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_17 28569 30344 + GH35
TC HRGMv2_0401_14 HRGMv2_0401_14_18 31338 34550 + 1.B.14.6.1
pfam HRGMv2_0401_14 HRGMv2_0401_14_19 34602 36314 + SusD_RagB | SusD-like_3
pfam HRGMv2_0401_14 HRGMv2_0401_14_20 36352 37746 + SGBP_B_XBD
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_21 37824 39635 + CBM4 | GH10
TC HRGMv2_0401_14 HRGMv2_0401_14_22 40075 43332 + 1.B.14.6.1
pfam HRGMv2_0401_14 HRGMv2_0401_14_23 43345 45291 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_24 45538 48516 + GH115
pfam HRGMv2_0401_14 HRGMv2_0401_14_25 48888 49754 + AP_endonuc_2
pfam HRGMv2_0401_14 HRGMv2_0401_14_26 49751 50416 + DUF3826
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_27 50462 52543 + GH127
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_28 52489 54282 + GH141
TC HRGMv2_0401_14 HRGMv2_0401_14_29 54345 55721 + 2.A.1.1.74
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_30 55705 57786 + GH78
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_31 57783 60422 + GH138
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_32 60444 64487 + CBM57 | CBM97 | GH137 | GH2
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_33 64812 67910 + GH2
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_34 67923 70733 + GH2
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_35 70733 73879 + GH106
CAZyme HRGMv2_0401_14 HRGMv2_0401_14_36 73914 75323 + CE20
TC HRGMv2_0401_14 HRGMv2_0401_14_37 75868 78696 - 1.B.42.1.8
Gene ID: HRGMv2_0401_14_4
Type: TC
Location: 3227 - 6556 (+)
Gene ID: HRGMv2_0401_14_5
Type: pfam
Location: 6588 - 8780 (+)
Gene ID: HRGMv2_0401_14_6
Type: pfam
Location: 9046 - 10455 (+)
Gene ID: HRGMv2_0401_14_7
Type: CAZyme
Location: 10863 - 13934 (+)
Gene ID: HRGMv2_0401_14_8
Type: STP
Location: 14068 - 14577 (+)
Gene ID: HRGMv2_0401_14_9
Type:
Location: 14625 - 14762 (+)
Gene ID: HRGMv2_0401_14_10
Type: CAZyme
Location: 15092 - 16057 (-)
Gene ID: HRGMv2_0401_14_11
Type: CAZyme
Location: 16100 - 17221 (-)
Gene ID: HRGMv2_0401_14_12
Type: TC
Location: 17228 - 18634 (-)
Gene ID: HRGMv2_0401_14_13
Type: pfam
Location: 18695 - 19876 (-)
Gene ID: HRGMv2_0401_14_14
Type: CAZyme
Location: 20118 - 22631 (+)
Gene ID: HRGMv2_0401_14_15
Type: TF
Location: 22714 - 26628 (+)
Gene ID: HRGMv2_0401_14_16
Type: CAZyme
Location: 26625 - 28559 (+)
Gene ID: HRGMv2_0401_14_17
Type: CAZyme
Location: 28569 - 30344 (+)
Gene ID: HRGMv2_0401_14_18
Type: TC
Location: 31338 - 34550 (+)
Gene ID: HRGMv2_0401_14_19
Type: pfam
Location: 34602 - 36314 (+)
Gene ID: HRGMv2_0401_14_20
Type: pfam
Location: 36352 - 37746 (+)
Gene ID: HRGMv2_0401_14_21
Type: CAZyme
Location: 37824 - 39635 (+)
Gene ID: HRGMv2_0401_14_22
Type: TC
Location: 40075 - 43332 (+)
Gene ID: HRGMv2_0401_14_23
Type: pfam
Location: 43345 - 45291 (+)
Gene ID: HRGMv2_0401_14_24
Type: CAZyme
Location: 45538 - 48516 (+)
Gene ID: HRGMv2_0401_14_25
Type: pfam
Location: 48888 - 49754 (+)
Gene ID: HRGMv2_0401_14_26
Type: pfam
Location: 49751 - 50416 (+)
Gene ID: HRGMv2_0401_14_27
Type: CAZyme
Location: 50462 - 52543 (+)
Gene ID: HRGMv2_0401_14_28
Type: CAZyme
Location: 52489 - 54282 (+)
Gene ID: HRGMv2_0401_14_29
Type: TC
Location: 54345 - 55721 (+)
Gene ID: HRGMv2_0401_14_30
Type: CAZyme
Location: 55705 - 57786 (+)
Gene ID: HRGMv2_0401_14_31
Type: CAZyme
Location: 57783 - 60422 (+)
Gene ID: HRGMv2_0401_14_32
Type: CAZyme
Location: 60444 - 64487 (+)
Gene ID: HRGMv2_0401_14_33
Type: CAZyme
Location: 64812 - 67910 (+)
Gene ID: HRGMv2_0401_14_34
Type: CAZyme
Location: 67923 - 70733 (+)
Gene ID: HRGMv2_0401_14_35
Type: CAZyme
Location: 70733 - 73879 (+)
Gene ID: HRGMv2_0401_14_36
Type: CAZyme
Location: 73914 - 75323 (+)
Gene ID: HRGMv2_0401_14_37
Type: TC
Location: 75868 - 78696 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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