Cluster: HRGMv2_0401_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: pectin
- Genome ID: HRGMv2_0401
- CGC Family ID: CGCFAM_00136
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0401_10 | HRGMv2_0401_10_66 | 72011 | 75202 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0401_10 | HRGMv2_0401_10_67 | 75267 | 77237 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_0401_10 | HRGMv2_0401_10_68 | 77458 | 78828 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0401_10 | HRGMv2_0401_10_69 | 79074 | 82970 | + | CE8 | PL1_2 |
Gene ID: HRGMv2_0401_10_66
Type: TC
Location: 72011 - 75202 (+)
Type: TC
Location: 72011 - 75202 (+)
Gene ID: HRGMv2_0401_10_67
Type: pfam
Location: 75267 - 77237 (+)
Type: pfam
Location: 75267 - 77237 (+)
Gene ID: HRGMv2_0401_10_68
Type:
Location: 77458 - 78828 (+)
Type:
Location: 77458 - 78828 (+)
Gene ID: HRGMv2_0401_10_69
Type: CAZyme
Location: 79074 - 82970 (+)
Type: CAZyme
Location: 79074 - 82970 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0401_10_66 | vegetarian > omnivore | 1.45024 | 0.03420 |
| HRGMv2_0401_10_67 | vegetarian > omnivore | 1.79936 | 0.03420 |