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Cluster: HRGMv2_0401_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0401_1 HRGMv2_0401_1_111 167943 169145 + 2.A.23.2.11
pfam HRGMv2_0401_1 HRGMv2_0401_1_112 169375 169908 - Lysine_decarbox | LDcluster4
NULL(UNKNOWN) HRGMv2_0401_1 HRGMv2_0401_1_113 169970 170059 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0401_1 HRGMv2_0401_1_114 170140 172023 + 3.A.18.1.1
CAZyme HRGMv2_0401_1 HRGMv2_0401_1_115 172269 174059 + GH141
TF HRGMv2_0401_1 HRGMv2_0401_1_116 174276 175160 - HTH_AraC
NULL(UNKNOWN) HRGMv2_0401_1 HRGMv2_0401_1_117 175217 176893 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0401_1 HRGMv2_0401_1_118 177069 178166 - 8.A.1.1.2
pfam HRGMv2_0401_1 HRGMv2_0401_1_119 178237 179559 - OEP | OEP
TC HRGMv2_0401_1 HRGMv2_0401_1_120 180368 183505 + 1.B.14.6.1
Gene ID: HRGMv2_0401_1_111
Type: TC
Location: 167943 - 169145 (+)
Gene ID: HRGMv2_0401_1_112
Type: pfam
Location: 169375 - 169908 (-)
Gene ID: HRGMv2_0401_1_113
Type:
Location: 169970 - 170059 (-)
Gene ID: HRGMv2_0401_1_114
Type: TC
Location: 170140 - 172023 (+)
Gene ID: HRGMv2_0401_1_115
Type: CAZyme
Location: 172269 - 174059 (+)
Gene ID: HRGMv2_0401_1_116
Type: TF
Location: 174276 - 175160 (-)
Gene ID: HRGMv2_0401_1_117
Type:
Location: 175217 - 176893 (-)
Gene ID: HRGMv2_0401_1_118
Type: TC
Location: 177069 - 178166 (-)
Gene ID: HRGMv2_0401_1_119
Type: pfam
Location: 178237 - 179559 (-)
Gene ID: HRGMv2_0401_1_120
Type: TC
Location: 180368 - 183505 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0401_1_111 vegetarian > omnivore 1.03357 0.03420
HRGMv2_0401_1_112 vegetarian > vegan 1.06102 0.01548

🧭 Explore Read Mapping of CGC

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