Cluster: HRGMv2_0401_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate: beta-mannan
- Genome ID: HRGMv2_0401
- CGC Family ID: CGCFAM_00082
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0401_7 | HRGMv2_0401_7_29 | 37429 | 38004 | - | 2.A.51.1.6 |
| TC | HRGMv2_0401_7 | HRGMv2_0401_7_30 | 38048 | 38593 | - | 2.A.51.1.6 |
| peptidase | HRGMv2_0401_7 | HRGMv2_0401_7_31 | 38746 | 42447 | - | C56.972 |
| NULL(UNKNOWN) | HRGMv2_0401_7 | HRGMv2_0401_7_32 | 42450 | 42614 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0401_7 | HRGMv2_0401_7_33 | 42894 | 45263 | - | GH3 |
| CAZyme | HRGMv2_0401_7 | HRGMv2_0401_7_34 | 45275 | 47560 | - | GH3 |
| NULL(UNKNOWN) | HRGMv2_0401_7 | HRGMv2_0401_7_35 | 47672 | 48664 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0401_7 | HRGMv2_0401_7_36 | 48676 | 50397 | - | 8.A.46.2.2 |
| TC | HRGMv2_0401_7 | HRGMv2_0401_7_37 | 50443 | 53622 | - | 1.B.14.6.2 |
| CAZyme | HRGMv2_0401_7 | HRGMv2_0401_7_38 | 53909 | 55105 | - | GH5_4 |
| TC | HRGMv2_0401_7 | HRGMv2_0401_7_39 | 55272 | 56657 | - | 2.A.2.3.6 |
| CAZyme | HRGMv2_0401_7 | HRGMv2_0401_7_40 | 56693 | 59185 | - | GH94 |
| CAZyme | HRGMv2_0401_7 | HRGMv2_0401_7_41 | 59214 | 60329 | - | GH5_38 |
Gene ID: HRGMv2_0401_7_29
Type: TC
Location: 37429 - 38004 (-)
Type: TC
Location: 37429 - 38004 (-)
Gene ID: HRGMv2_0401_7_30
Type: TC
Location: 38048 - 38593 (-)
Type: TC
Location: 38048 - 38593 (-)
Gene ID: HRGMv2_0401_7_31
Type: peptidase
Location: 38746 - 42447 (-)
Type: peptidase
Location: 38746 - 42447 (-)
Gene ID: HRGMv2_0401_7_32
Type:
Location: 42450 - 42614 (-)
Type:
Location: 42450 - 42614 (-)
Gene ID: HRGMv2_0401_7_33
Type: CAZyme
Location: 42894 - 45263 (-)
Type: CAZyme
Location: 42894 - 45263 (-)
Gene ID: HRGMv2_0401_7_34
Type: CAZyme
Location: 45275 - 47560 (-)
Type: CAZyme
Location: 45275 - 47560 (-)
Gene ID: HRGMv2_0401_7_35
Type:
Location: 47672 - 48664 (-)
Type:
Location: 47672 - 48664 (-)
Gene ID: HRGMv2_0401_7_36
Type: TC
Location: 48676 - 50397 (-)
Type: TC
Location: 48676 - 50397 (-)
Gene ID: HRGMv2_0401_7_37
Type: TC
Location: 50443 - 53622 (-)
Type: TC
Location: 50443 - 53622 (-)
Gene ID: HRGMv2_0401_7_38
Type: CAZyme
Location: 53909 - 55105 (-)
Type: CAZyme
Location: 53909 - 55105 (-)
Gene ID: HRGMv2_0401_7_39
Type: TC
Location: 55272 - 56657 (-)
Type: TC
Location: 55272 - 56657 (-)
Gene ID: HRGMv2_0401_7_40
Type: CAZyme
Location: 56693 - 59185 (-)
Type: CAZyme
Location: 56693 - 59185 (-)
Gene ID: HRGMv2_0401_7_41
Type: CAZyme
Location: 59214 - 60329 (-)
Type: CAZyme
Location: 59214 - 60329 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.