Cluster: HRGMv2_0401_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0401
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0401_4 | HRGMv2_0401_4_2 | 1349 | 4495 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0401_4 | HRGMv2_0401_4_3 | 4530 | 6257 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0401_4 | HRGMv2_0401_4_4 | 6277 | 7659 | + | DUF4960 |
| CAZyme | HRGMv2_0401_4 | HRGMv2_0401_4_5 | 7694 | 9223 | + | GH32 |
| CAZyme | HRGMv2_0401_4 | HRGMv2_0401_4_6 | 9438 | 11231 | + | GH32 |
| TC | HRGMv2_0401_4 | HRGMv2_0401_4_7 | 11235 | 12392 | + | 2.A.1.7.17 |
Gene ID: HRGMv2_0401_4_2
Type: TC
Location: 1349 - 4495 (+)
Type: TC
Location: 1349 - 4495 (+)
Gene ID: HRGMv2_0401_4_3
Type: pfam
Location: 4530 - 6257 (+)
Type: pfam
Location: 4530 - 6257 (+)
Gene ID: HRGMv2_0401_4_4
Type: pfam
Location: 6277 - 7659 (+)
Type: pfam
Location: 6277 - 7659 (+)
Gene ID: HRGMv2_0401_4_5
Type: CAZyme
Location: 7694 - 9223 (+)
Type: CAZyme
Location: 7694 - 9223 (+)
Gene ID: HRGMv2_0401_4_6
Type: CAZyme
Location: 9438 - 11231 (+)
Type: CAZyme
Location: 9438 - 11231 (+)
Gene ID: HRGMv2_0401_4_7
Type: TC
Location: 11235 - 12392 (+)
Type: TC
Location: 11235 - 12392 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.