dbCAN Logo

Cluster: HRGMv2_0401_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0401_1 HRGMv2_0401_1_65 101736 102968 - 9.B.156.3.1
CAZyme HRGMv2_0401_1 HRGMv2_0401_1_66 103459 104619 - GT4
pfam HRGMv2_0401_1 HRGMv2_0401_1_67 104865 106070 - Phosphodiest
pfam HRGMv2_0401_1 HRGMv2_0401_1_68 106427 107593 - AhpC-TSA | Thioredoxin_8 | DUF4369
TC HRGMv2_0401_1 HRGMv2_0401_1_69 107596 107952 - 1.A.43.1.13
pfam HRGMv2_0401_1 HRGMv2_0401_1_70 108512 109651 - PepSY_TM
pfam HRGMv2_0401_1 HRGMv2_0401_1_71 109759 111192 - DUF4374
TC HRGMv2_0401_1 HRGMv2_0401_1_72 111252 113642 - 1.B.14.3.6
Gene ID: HRGMv2_0401_1_65
Type: TC
Location: 101736 - 102968 (-)
Gene ID: HRGMv2_0401_1_66
Type: CAZyme
Location: 103459 - 104619 (-)
Gene ID: HRGMv2_0401_1_67
Type: pfam
Location: 104865 - 106070 (-)
Gene ID: HRGMv2_0401_1_68
Type: pfam
Location: 106427 - 107593 (-)
Gene ID: HRGMv2_0401_1_69
Type: TC
Location: 107596 - 107952 (-)
Gene ID: HRGMv2_0401_1_70
Type: pfam
Location: 108512 - 109651 (-)
Gene ID: HRGMv2_0401_1_71
Type: pfam
Location: 109759 - 111192 (-)
Gene ID: HRGMv2_0401_1_72
Type: TC
Location: 111252 - 113642 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0401_1_65 vegetarian > vegan 1.00252 0.01548
HRGMv2_0401_1_66 vegetarian > omnivore 1.00469 0.03420

🧭 Explore Read Mapping of CGC

← Back to Cluster List