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Cluster: HRGMv2_0398_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0398_9 HRGMv2_0398_9_12 13441 14556 - GT28
pfam HRGMv2_0398_9 HRGMv2_0398_9_13 14777 15319 - Lysine_decarbox | LDcluster4
pfam HRGMv2_0398_9 HRGMv2_0398_9_14 15336 15713 - Ribonuc_L-PSP
TC HRGMv2_0398_9 HRGMv2_0398_9_15 15800 16441 - 1.C.113.1.3
NULL(UNKNOWN) HRGMv2_0398_9 HRGMv2_0398_9_16 16592 17347 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0398_9 HRGMv2_0398_9_17 17436 19064 - 8.A.46.3.2
TC HRGMv2_0398_9 HRGMv2_0398_9_18 19131 22100 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0398_9 HRGMv2_0398_9_19 22245 22604 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0398_9 HRGMv2_0398_9_20 22973 23350 - DUF1634
TC HRGMv2_0398_9 HRGMv2_0398_9_21 23556 24392 - 2.A.102.4.9
Gene ID: HRGMv2_0398_9_12
Type: CAZyme
Location: 13441 - 14556 (-)
Gene ID: HRGMv2_0398_9_13
Type: pfam
Location: 14777 - 15319 (-)
Gene ID: HRGMv2_0398_9_14
Type: pfam
Location: 15336 - 15713 (-)
Gene ID: HRGMv2_0398_9_15
Type: TC
Location: 15800 - 16441 (-)
Gene ID: HRGMv2_0398_9_16
Type:
Location: 16592 - 17347 (-)
Gene ID: HRGMv2_0398_9_17
Type: TC
Location: 17436 - 19064 (-)
Gene ID: HRGMv2_0398_9_18
Type: TC
Location: 19131 - 22100 (-)
Gene ID: HRGMv2_0398_9_19
Type:
Location: 22245 - 22604 (-)
Gene ID: HRGMv2_0398_9_20
Type: pfam
Location: 22973 - 23350 (-)
Gene ID: HRGMv2_0398_9_21
Type: TC
Location: 23556 - 24392 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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