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Cluster: HRGMv2_0398_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0398_1 HRGMv2_0398_1_83 109822 110940 - GH5_7
pfam HRGMv2_0398_1 HRGMv2_0398_1_84 110972 111460 - SmpB
pfam HRGMv2_0398_1 HRGMv2_0398_1_85 111577 112083 - DMP19
TC HRGMv2_0398_1 HRGMv2_0398_1_86 112168 113493 - 1.I.1.1.3
pfam HRGMv2_0398_1 HRGMv2_0398_1_87 113792 114568 + Poly_export | SLBB_2
pfam HRGMv2_0398_1 HRGMv2_0398_1_88 114875 116158 + HlyD_3
TC HRGMv2_0398_1 HRGMv2_0398_1_89 116242 117546 + 3.A.1.122.2
pfam HRGMv2_0398_1 HRGMv2_0398_1_90 117678 118934 + FtsX
NULL(UNKNOWN) HRGMv2_0398_1 HRGMv2_0398_1_91 118898 119320 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0398_1 HRGMv2_0398_1_92 119513 120190 + 3.A.1.122.14
Gene ID: HRGMv2_0398_1_83
Type: CAZyme
Location: 109822 - 110940 (-)
Gene ID: HRGMv2_0398_1_84
Type: pfam
Location: 110972 - 111460 (-)
Gene ID: HRGMv2_0398_1_85
Type: pfam
Location: 111577 - 112083 (-)
Gene ID: HRGMv2_0398_1_86
Type: TC
Location: 112168 - 113493 (-)
Gene ID: HRGMv2_0398_1_87
Type: pfam
Location: 113792 - 114568 (+)
Gene ID: HRGMv2_0398_1_88
Type: pfam
Location: 114875 - 116158 (+)
Gene ID: HRGMv2_0398_1_89
Type: TC
Location: 116242 - 117546 (+)
Gene ID: HRGMv2_0398_1_90
Type: pfam
Location: 117678 - 118934 (+)
Gene ID: HRGMv2_0398_1_91
Type:
Location: 118898 - 119320 (-)
Gene ID: HRGMv2_0398_1_92
Type: TC
Location: 119513 - 120190 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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