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Cluster: HRGMv2_0398_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0398_56 HRGMv2_0398_56_2 601 1212 - CE4
pfam HRGMv2_0398_56 HRGMv2_0398_56_3 1496 4804 - TMEM260-like
NULL(UNKNOWN) HRGMv2_0398_56 HRGMv2_0398_56_4 4864 4977 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0398_56 HRGMv2_0398_56_5 5108 7441 - GH20
pfam HRGMv2_0398_56 HRGMv2_0398_56_6 7643 8908 + GARS_A | GARS_C | GARS_N
NULL(UNKNOWN) HRGMv2_0398_56 HRGMv2_0398_56_7 9381 10268 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0398_56 HRGMv2_0398_56_8 10311 10766 + 9.B.27.3.1
pfam HRGMv2_0398_56 HRGMv2_0398_56_9 10797 11666 + ZnuA
TC HRGMv2_0398_56 HRGMv2_0398_56_10 11663 12316 + 3.A.1.15.11
Gene ID: HRGMv2_0398_56_2
Type: CAZyme
Location: 601 - 1212 (-)
Gene ID: HRGMv2_0398_56_3
Type: pfam
Location: 1496 - 4804 (-)
Gene ID: HRGMv2_0398_56_4
Type:
Location: 4864 - 4977 (-)
Gene ID: HRGMv2_0398_56_5
Type: CAZyme
Location: 5108 - 7441 (-)
Gene ID: HRGMv2_0398_56_6
Type: pfam
Location: 7643 - 8908 (+)
Gene ID: HRGMv2_0398_56_7
Type:
Location: 9381 - 10268 (+)
Gene ID: HRGMv2_0398_56_8
Type: TC
Location: 10311 - 10766 (+)
Gene ID: HRGMv2_0398_56_9
Type: pfam
Location: 10797 - 11666 (+)
Gene ID: HRGMv2_0398_56_10
Type: TC
Location: 11663 - 12316 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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