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Cluster: HRGMv2_0398_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0398_1 HRGMv2_0398_1_39 44178 45833 + 3.A.1.106.2
CAZyme HRGMv2_0398_1 HRGMv2_0398_1_40 45954 48833 + GH20
STP HRGMv2_0398_1 HRGMv2_0398_1_41 49177 51561 + Pyr_redox_2
TC HRGMv2_0398_1 HRGMv2_0398_1_42 51889 52257 + 2.A.7.34.3
pfam HRGMv2_0398_1 HRGMv2_0398_1_43 52254 53051 + ATP_bind_3
pfam HRGMv2_0398_1 HRGMv2_0398_1_44 53160 54929 - tRNA-synt_2 | tRNA_anti-codon | GAD
TC HRGMv2_0398_1 HRGMv2_0398_1_45 55158 56774 - 3.A.1.121.4
Gene ID: HRGMv2_0398_1_39
Type: TC
Location: 44178 - 45833 (+)
Gene ID: HRGMv2_0398_1_40
Type: CAZyme
Location: 45954 - 48833 (+)
Gene ID: HRGMv2_0398_1_41
Type: STP
Location: 49177 - 51561 (+)
Gene ID: HRGMv2_0398_1_42
Type: TC
Location: 51889 - 52257 (+)
Gene ID: HRGMv2_0398_1_43
Type: pfam
Location: 52254 - 53051 (+)
Gene ID: HRGMv2_0398_1_44
Type: pfam
Location: 53160 - 54929 (-)
Gene ID: HRGMv2_0398_1_45
Type: TC
Location: 55158 - 56774 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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