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Cluster: HRGMv2_0390_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0390_1 HRGMv2_0390_1_43 49974 52067 - GH13_6
pfam HRGMv2_0390_1 HRGMv2_0390_1_44 52809 54287 - SusF_N
pfam HRGMv2_0390_1 HRGMv2_0390_1_45 54401 55576 - SusE | SusF_SusE
TC HRGMv2_0390_1 HRGMv2_0390_1_46 55636 57330 - 8.A.46.1.1
TC HRGMv2_0390_1 HRGMv2_0390_1_47 57379 60417 - 1.B.14.6.1
TF HRGMv2_0390_1 HRGMv2_0390_1_48 60868 61923 + LacI
NULL(UNKNOWN) HRGMv2_0390_1 HRGMv2_0390_1_49 61935 62042 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0390_1 HRGMv2_0390_1_50 62052 63374 + 2.A.2.6.2
CAZyme HRGMv2_0390_1 HRGMv2_0390_1_51 63846 66236 - GH2
Gene ID: HRGMv2_0390_1_43
Type: CAZyme
Location: 49974 - 52067 (-)
Gene ID: HRGMv2_0390_1_44
Type: pfam
Location: 52809 - 54287 (-)
Gene ID: HRGMv2_0390_1_45
Type: pfam
Location: 54401 - 55576 (-)
Gene ID: HRGMv2_0390_1_46
Type: TC
Location: 55636 - 57330 (-)
Gene ID: HRGMv2_0390_1_47
Type: TC
Location: 57379 - 60417 (-)
Gene ID: HRGMv2_0390_1_48
Type: TF
Location: 60868 - 61923 (+)
Gene ID: HRGMv2_0390_1_49
Type:
Location: 61935 - 62042 (+)
Gene ID: HRGMv2_0390_1_50
Type: TC
Location: 62052 - 63374 (+)
Gene ID: HRGMv2_0390_1_51
Type: CAZyme
Location: 63846 - 66236 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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