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Cluster: HRGMv2_0390_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0390_11 HRGMv2_0390_11_21 17467 17817 + 3.D.1.8.1
TC HRGMv2_0390_11 HRGMv2_0390_11_22 17808 18461 + 3.D.1.6.1
TC HRGMv2_0390_11 HRGMv2_0390_11_23 18458 20026 + 3.D.1.5.1
TC HRGMv2_0390_11 HRGMv2_0390_11_24 20143 21225 + 3.D.1.5.1
TC HRGMv2_0390_11 HRGMv2_0390_11_25 21268 21798 + 3.D.1.1.1
pfam HRGMv2_0390_11 HRGMv2_0390_11_26 21814 22326 + Oxidored_q3
TC HRGMv2_0390_11 HRGMv2_0390_11_27 22333 22641 + 3.D.1.2.1
TC HRGMv2_0390_11 HRGMv2_0390_11_28 22648 24627 + 3.D.9.1.1
TC HRGMv2_0390_11 HRGMv2_0390_11_29 24643 26148 + 3.D.1.2.1
NULL(UNKNOWN) HRGMv2_0390_11 HRGMv2_0390_11_30 26145 26240 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0390_11 HRGMv2_0390_11_31 26307 27743 + 3.D.1.8.1
pfam HRGMv2_0390_11 HRGMv2_0390_11_32 28186 29007 - SpoU_methylase
TF HRGMv2_0390_11 HRGMv2_0390_11_33 29054 33016 - HTH_AraC
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_34 33257 36409 + GH2
NULL(UNKNOWN) HRGMv2_0390_11 HRGMv2_0390_11_35 37662 37955 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0390_11 HRGMv2_0390_11_36 38317 41589 + 1.B.14.6.1
pfam HRGMv2_0390_11 HRGMv2_0390_11_37 41696 43744 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_38 44471 45313 + GH16_3
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_39 45492 46739 + GH154
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_40 46834 48189 + PL42
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_41 48220 49338 + GH105
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_42 49450 50556 + GH43_24
NULL(UNKNOWN) HRGMv2_0390_11 HRGMv2_0390_11_43 50418 50705 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_44 50890 53136 + CE1
NULL(UNKNOWN) HRGMv2_0390_11 HRGMv2_0390_11_45 53186 53587 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_46 53621 55648 + GH115
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_47 55840 57837 + GH127
TF HRGMv2_0390_11 HRGMv2_0390_11_48 57936 58940 - HTH_AraC | HTH_AraC
TC HRGMv2_0390_11 HRGMv2_0390_11_49 59046 60422 + 2.A.1.1.55
STP HRGMv2_0390_11 HRGMv2_0390_11_50 60432 63722 + TPR_2
NULL(UNKNOWN) HRGMv2_0390_11 HRGMv2_0390_11_51 64110 64373 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_52 64448 66775 + GH95
NULL(UNKNOWN) HRGMv2_0390_11 HRGMv2_0390_11_53 67011 67232 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0390_11 HRGMv2_0390_11_54 67575 70670 + 1.B.14.6.1
pfam HRGMv2_0390_11 HRGMv2_0390_11_55 70710 72293 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_56 72636 75023 + GH36
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_57 75053 77161 + GH36
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_58 77343 78977 + CBM91 | GH43_10
NULL(UNKNOWN) HRGMv2_0390_11 HRGMv2_0390_11_59 79008 79136 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0390_11 HRGMv2_0390_11_60 79153 83127 + HTH_AraC
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_61 83323 85284 + CE20 | CE20
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_62 85355 87496 + GH36
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_63 87644 90595 + CBM32 | GH2
CAZyme HRGMv2_0390_11 HRGMv2_0390_11_64 90620 92809 + GH92
Gene ID: HRGMv2_0390_11_21
Type: TC
Location: 17467 - 17817 (+)
Gene ID: HRGMv2_0390_11_22
Type: TC
Location: 17808 - 18461 (+)
Gene ID: HRGMv2_0390_11_23
Type: TC
Location: 18458 - 20026 (+)
Gene ID: HRGMv2_0390_11_24
Type: TC
Location: 20143 - 21225 (+)
Gene ID: HRGMv2_0390_11_25
Type: TC
Location: 21268 - 21798 (+)
Gene ID: HRGMv2_0390_11_26
Type: pfam
Location: 21814 - 22326 (+)
Gene ID: HRGMv2_0390_11_27
Type: TC
Location: 22333 - 22641 (+)
Gene ID: HRGMv2_0390_11_28
Type: TC
Location: 22648 - 24627 (+)
Gene ID: HRGMv2_0390_11_29
Type: TC
Location: 24643 - 26148 (+)
Gene ID: HRGMv2_0390_11_30
Type:
Location: 26145 - 26240 (+)
Gene ID: HRGMv2_0390_11_31
Type: TC
Location: 26307 - 27743 (+)
Gene ID: HRGMv2_0390_11_32
Type: pfam
Location: 28186 - 29007 (-)
Gene ID: HRGMv2_0390_11_33
Type: TF
Location: 29054 - 33016 (-)
Gene ID: HRGMv2_0390_11_34
Type: CAZyme
Location: 33257 - 36409 (+)
Gene ID: HRGMv2_0390_11_35
Type:
Location: 37662 - 37955 (-)
Gene ID: HRGMv2_0390_11_36
Type: TC
Location: 38317 - 41589 (+)
Gene ID: HRGMv2_0390_11_37
Type: pfam
Location: 41696 - 43744 (+)
Gene ID: HRGMv2_0390_11_38
Type: CAZyme
Location: 44471 - 45313 (+)
Gene ID: HRGMv2_0390_11_39
Type: CAZyme
Location: 45492 - 46739 (+)
Gene ID: HRGMv2_0390_11_40
Type: CAZyme
Location: 46834 - 48189 (+)
Gene ID: HRGMv2_0390_11_41
Type: CAZyme
Location: 48220 - 49338 (+)
Gene ID: HRGMv2_0390_11_42
Type: CAZyme
Location: 49450 - 50556 (+)
Gene ID: HRGMv2_0390_11_43
Type:
Location: 50418 - 50705 (-)
Gene ID: HRGMv2_0390_11_44
Type: CAZyme
Location: 50890 - 53136 (+)
Gene ID: HRGMv2_0390_11_45
Type:
Location: 53186 - 53587 (+)
Gene ID: HRGMv2_0390_11_46
Type: CAZyme
Location: 53621 - 55648 (+)
Gene ID: HRGMv2_0390_11_47
Type: CAZyme
Location: 55840 - 57837 (+)
Gene ID: HRGMv2_0390_11_48
Type: TF
Location: 57936 - 58940 (-)
Gene ID: HRGMv2_0390_11_49
Type: TC
Location: 59046 - 60422 (+)
Gene ID: HRGMv2_0390_11_50
Type: STP
Location: 60432 - 63722 (+)
Gene ID: HRGMv2_0390_11_51
Type:
Location: 64110 - 64373 (-)
Gene ID: HRGMv2_0390_11_52
Type: CAZyme
Location: 64448 - 66775 (+)
Gene ID: HRGMv2_0390_11_53
Type:
Location: 67011 - 67232 (-)
Gene ID: HRGMv2_0390_11_54
Type: TC
Location: 67575 - 70670 (+)
Gene ID: HRGMv2_0390_11_55
Type: pfam
Location: 70710 - 72293 (+)
Gene ID: HRGMv2_0390_11_56
Type: CAZyme
Location: 72636 - 75023 (+)
Gene ID: HRGMv2_0390_11_57
Type: CAZyme
Location: 75053 - 77161 (+)
Gene ID: HRGMv2_0390_11_58
Type: CAZyme
Location: 77343 - 78977 (+)
Gene ID: HRGMv2_0390_11_59
Type:
Location: 79008 - 79136 (-)
Gene ID: HRGMv2_0390_11_60
Type: TF
Location: 79153 - 83127 (+)
Gene ID: HRGMv2_0390_11_61
Type: CAZyme
Location: 83323 - 85284 (+)
Gene ID: HRGMv2_0390_11_62
Type: CAZyme
Location: 85355 - 87496 (+)
Gene ID: HRGMv2_0390_11_63
Type: CAZyme
Location: 87644 - 90595 (+)
Gene ID: HRGMv2_0390_11_64
Type: CAZyme
Location: 90620 - 92809 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0390_11_49 vegan > omnivore 16.66613 0.00855
HRGMv2_0390_11_49 vegetarian > omnivore 16.25437 0.01332
HRGMv2_0390_11_50 vegan > omnivore 2.79579 0.00855
HRGMv2_0390_11_50 vegetarian > omnivore 2.69850 0.01332

🧭 Explore Read Mapping of CGC

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