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Cluster: HRGMv2_0390_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0390_1 HRGMv2_0390_1_1 696 2588 - GH13_46
CAZyme HRGMv2_0390_1 HRGMv2_0390_1_2 2636 4618 - GH13_14
NULL(UNKNOWN) HRGMv2_0390_1 HRGMv2_0390_1_3 4660 4851 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0390_1 HRGMv2_0390_1_4 4755 6881 - GH97
CAZyme HRGMv2_0390_1 HRGMv2_0390_1_5 6924 9626 - GH77
TC HRGMv2_0390_1 HRGMv2_0390_1_6 9848 10378 - 9.B.196.1.2
NULL(UNKNOWN) HRGMv2_0390_1 HRGMv2_0390_1_7 10384 10911 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0390_1 HRGMv2_0390_1_8 10962 11297 + RBFA
TC HRGMv2_0390_1 HRGMv2_0390_1_9 11294 12520 + 3.A.1.125.1
Gene ID: HRGMv2_0390_1_1
Type: CAZyme
Location: 696 - 2588 (-)
Gene ID: HRGMv2_0390_1_2
Type: CAZyme
Location: 2636 - 4618 (-)
Gene ID: HRGMv2_0390_1_3
Type:
Location: 4660 - 4851 (+)
Gene ID: HRGMv2_0390_1_4
Type: CAZyme
Location: 4755 - 6881 (-)
Gene ID: HRGMv2_0390_1_5
Type: CAZyme
Location: 6924 - 9626 (-)
Gene ID: HRGMv2_0390_1_6
Type: TC
Location: 9848 - 10378 (-)
Gene ID: HRGMv2_0390_1_7
Type:
Location: 10384 - 10911 (+)
Gene ID: HRGMv2_0390_1_8
Type: pfam
Location: 10962 - 11297 (+)
Gene ID: HRGMv2_0390_1_9
Type: TC
Location: 11294 - 12520 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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