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Cluster: HRGMv2_0389_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0389_2 HRGMv2_0389_2_157 161489 163486 + GH13_14
TC HRGMv2_0389_2 HRGMv2_0389_2_158 163504 164952 + 3.A.1.30.1
TC HRGMv2_0389_2 HRGMv2_0389_2_159 164997 166502 + 2.A.38.1.3
pfam HRGMv2_0389_2 HRGMv2_0389_2_160 166504 168525 - Helicase_C | UVR | ResIII | UvrB | UvrB_inter
TC HRGMv2_0389_2 HRGMv2_0389_2_161 168831 171569 + 1.B.14.6.1
pfam HRGMv2_0389_2 HRGMv2_0389_2_162 171580 173232 + SusD_RagB | SusD-like_3
pfam HRGMv2_0389_2 HRGMv2_0389_2_163 173486 175201 - SusD_RagB | SusD-like_3
TC HRGMv2_0389_2 HRGMv2_0389_2_164 175232 178576 - 1.B.14.6.2
NULL(UNKNOWN) HRGMv2_0389_2 HRGMv2_0389_2_165 179043 179264 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0389_2 HRGMv2_0389_2_166 179272 180624 + NQRA_N | NQRA_SLBB | NQRA_2nd
TC HRGMv2_0389_2 HRGMv2_0389_2_167 180702 181865 + 3.D.5.1.1
pfam HRGMv2_0389_2 HRGMv2_0389_2_168 181878 182558 + FMN_bind
TC HRGMv2_0389_2 HRGMv2_0389_2_169 182576 183214 + 3.D.5.1.1
TC HRGMv2_0389_2 HRGMv2_0389_2_170 183236 183859 + 3.D.5.1.1
TC HRGMv2_0389_2 HRGMv2_0389_2_171 183885 185147 + 3.D.5.1.1
pfam HRGMv2_0389_2 HRGMv2_0389_2_172 185983 188394 + Poly_export | SLBB | SLBB | SLBB | SLBB | SLBB | SLBB_2 | SLBB_2
TC HRGMv2_0389_2 HRGMv2_0389_2_173 188618 189730 + 9.B.146.1.4
Gene ID: HRGMv2_0389_2_157
Type: CAZyme
Location: 161489 - 163486 (+)
Gene ID: HRGMv2_0389_2_158
Type: TC
Location: 163504 - 164952 (+)
Gene ID: HRGMv2_0389_2_159
Type: TC
Location: 164997 - 166502 (+)
Gene ID: HRGMv2_0389_2_160
Type: pfam
Location: 166504 - 168525 (-)
Gene ID: HRGMv2_0389_2_161
Type: TC
Location: 168831 - 171569 (+)
Gene ID: HRGMv2_0389_2_162
Type: pfam
Location: 171580 - 173232 (+)
Gene ID: HRGMv2_0389_2_163
Type: pfam
Location: 173486 - 175201 (-)
Gene ID: HRGMv2_0389_2_164
Type: TC
Location: 175232 - 178576 (-)
Gene ID: HRGMv2_0389_2_165
Type:
Location: 179043 - 179264 (+)
Gene ID: HRGMv2_0389_2_166
Type: pfam
Location: 179272 - 180624 (+)
Gene ID: HRGMv2_0389_2_167
Type: TC
Location: 180702 - 181865 (+)
Gene ID: HRGMv2_0389_2_168
Type: pfam
Location: 181878 - 182558 (+)
Gene ID: HRGMv2_0389_2_169
Type: TC
Location: 182576 - 183214 (+)
Gene ID: HRGMv2_0389_2_170
Type: TC
Location: 183236 - 183859 (+)
Gene ID: HRGMv2_0389_2_171
Type: TC
Location: 183885 - 185147 (+)
Gene ID: HRGMv2_0389_2_172
Type: pfam
Location: 185983 - 188394 (+)
Gene ID: HRGMv2_0389_2_173
Type: TC
Location: 188618 - 189730 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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