Cluster: HRGMv2_0389_CGC48
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0389
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0389_31 | HRGMv2_0389_31_3 | 2703 | 4565 | - | 2.A.9.3.2 |
| peptidase | HRGMv2_0389_31 | HRGMv2_0389_31_4 | 4593 | 6191 | - | C26.964 |
| TC | HRGMv2_0389_31 | HRGMv2_0389_31_5 | 6331 | 7929 | + | 9.B.168.1.2 |
| CAZyme | HRGMv2_0389_31 | HRGMv2_0389_31_6 | 8168 | 10360 | - | GH163 |
| CAZyme | HRGMv2_0389_31 | HRGMv2_0389_31_7 | 10454 | 12775 | - | GH20 |
| NULL(UNKNOWN) | HRGMv2_0389_31 | HRGMv2_0389_31_8 | 13081 | 13209 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0389_31 | HRGMv2_0389_31_9 | 13541 | 14176 | + | 1.A.62.2.1 |
Gene ID: HRGMv2_0389_31_3
Type: TC
Location: 2703 - 4565 (-)
Type: TC
Location: 2703 - 4565 (-)
Gene ID: HRGMv2_0389_31_4
Type: peptidase
Location: 4593 - 6191 (-)
Type: peptidase
Location: 4593 - 6191 (-)
Gene ID: HRGMv2_0389_31_5
Type: TC
Location: 6331 - 7929 (+)
Type: TC
Location: 6331 - 7929 (+)
Gene ID: HRGMv2_0389_31_6
Type: CAZyme
Location: 8168 - 10360 (-)
Type: CAZyme
Location: 8168 - 10360 (-)
Gene ID: HRGMv2_0389_31_7
Type: CAZyme
Location: 10454 - 12775 (-)
Type: CAZyme
Location: 10454 - 12775 (-)
Gene ID: HRGMv2_0389_31_8
Type:
Location: 13081 - 13209 (+)
Type:
Location: 13081 - 13209 (+)
Gene ID: HRGMv2_0389_31_9
Type: TC
Location: 13541 - 14176 (+)
Type: TC
Location: 13541 - 14176 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.